TCONS_00037888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037888
Unique NameTCONS_00037888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037888 ID=TCONS_00037888|Name=TCONS_00037888|organism=Clytia hemisphaerica|type=transcript|length=570bp
TTTACAGACAACTAATAGTGATAAGAAATTTAGCTTGCTTATTGCTTCAA
ACccctttttaaagaaaaatgttacTATTGAAACTACTTAGTGATTTTGG
GTTGTTAAGTCTGCACCCCAGTTTTTATTCATTTAGTGATTCTTCAAAGA
AAAGTGCcctatcaaaaaattttaactatcccttaaaattttatttcagt
aCGTATTCGATTCAAATCAAATCATGCAGGCTGGTGCTGTGCCTGTTAGA
GGTGGATTGTATAATTTTCCAAATAATACTATGCAAATTAGAGGAGGTTA
CCCAAATGGACCTCGAATGCAATATCAAAATCAACAATATGTACAAATGC
AACAGCAAGATGTAATGCACCAACAAGGTTATATTCAAAATTACAATCAA
AATGTTTATGGAAGCAGTCCAAACTATCATACTCAACAATTCCGACAAGT
TTATCGTCCACAGCAGCCTGGCTATCCGCCAACCCCACAAGTTTACGCCC
TACAACAAGGTGGAACCCCTTTTCAACCTCAAGTCCAACTTCAAGCACAA
CAAATGCAACAAAATGTGCA
Run BLAST on NCBI

protein sequence of TCONS_00037888-protein

>TCONS_00037888-protein ID=TCONS_00037888-protein|Name=TCONS_00037888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MQAGAVPVRGGLYNFPNNTMQIRGGYPNGPRMQYQNQQYVQMQQQDVMHQ
QGYIQNYNQNVYGSSPNYHTQQFRQVYRPQQPGYPPTPQVYALQQGGTPF
QPQVQLQAQQMQQNV
Run BLAST on NCBI

transcript from alignment at sc0001732:7055..8360-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037888 ID=TCONS_00037888|Name=TCONS_00037888|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at sc0001732:7055..8360- (Clytia hemisphaerica)
TTTACAGACAACTAATAGTGATAAGAAATTTAGCTTGCTTATTGCTTCAA
ACCCCTTTTTAAAGAAAAATGTTACTATTGAAACTACTTAGTGATTTTGG
GTTGTTAAGTCTGCACCCCAGTTTTTATTCATTTAGTGATTCTTCAAAGA
AAAGTGCCCTATCAAAAAATTTTAACTATCCCTTAAAATTTTATTTCAGT
ACGTATTCGATTCAAATCAAATCATGCAGGCTGGTGCTGTGCCTGTTAGA
GGTGGATTGTATAATTTTCCAAATAATACTATGCAAATTAGAGGAGGTTA
CCCAAATGGACCTCGAATGCAATATCAAAATCAACAATATGTACAAATGC
AACAGCAAGATGTAATGCACCAACAAGGTTATATTCAAAATTACAATCAA
AATGTTTATGGAAGCAGTCCAAACTATCATACTCAACAATTCCGACAAGT
TTATCGTCCACAGCAGCCTGGCTATCCGCCAACCCCACAAGTTTACGCCC
TACAACAAGGTATGATTGAATAACAAAAAGAGAGAATTTTCAGGTTTCTT
CCCTATTTTTGACACATTTCTTTATTTTCCTACGAATTTTAAAAGTTTTG
TGACGAAAAATGGCTAAATTTGTGGTACTAATTGCGGTTTTGCTGAAAAA
CTGAAAAAAGCAAAAATCAGGTTTCGTGAAAATTTATTCTCTGAAGGTAA
AGTAGTGCGACTCCCTAAGTAATTTGTAGTAACTAAAAATCAGACCAGTC
TTGGTGCAGTATTACAAGCAGCCTAGTAGCAAACAAACTTTTGTTTTAGA
TCAGACCTTCTAGAAAATTTTATTTTAAATGGTCCTGCTTGCTTGTAAGT
GCTCACAGTCACTTGAAGACGCTCATGGCTGTTGATTTGACCGGTCATTA
CCTTCACAAGTGTTTGTTAGTAACGATTACATCAAAAAATTCTTATAAAA
CGATTCAACCAGAATGTGACTCTGAAAGATTTTAGAATTTAGTCAGTCTT
TTAAGGGTCAGTAAGTCGTGGTTGTAAAAATTTGCAAAAAGACGGCTAAG
TCCAGTTGATTTAGCGGCCATTTCAAGAGCGTCATTTTAACAGCTCAATC
AATTAGTTAAAGTCCTTTTAAAACAGTTTTTGATGTAATTGTTATTGATA
AATACTAACGCACGGCTAAGACTGGCCTTGCTAACATGCGGTCAGAACCA
ACTTCTGCTTTTTGATAATAGCTTGAGTTTTTTTTCTATTCTTAGGTGGA
ACCCCTTTTCAACCTCAAGTCCAACTTCAAGCACAACAAATGCAACAAAA
TGTGCA

Coding sequence (CDS) from alignment at sc0001732:7055..8360-

>TCONS_00037888 ID=TCONS_00037888|Name=TCONS_00037888|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0001732:7055..8360- (Clytia hemisphaerica)
GTGGAACCCCTTTTCAACCTCAAGTCCAACTTCAAGCACAACAAATGCAA
CAAAATGTGATGCAGGCTGGTGCTGTGCCTGTTAGAGGTGGATTGTATAA
TTTTCCAAATAATACTATGCAAATTAGAGGAGGTTACCCAAATGGACCTC
GAATGCAATATCAAAATCAACAATATGTACAAATGCAACAGCAAGATGTA
ATGCACCAACAAGGTTATATTCAAAATTACAATCAAAATGTTTATGGAAG
CAGTCCAAACTATCATACTCAACAATTCCGACAAGTTTATCGTCCACAGC
AGCCTGGCTATCCGCCAACCCCACAAGTTTACGCCCTACAACAAGGTGGA
ACCCCTTTTCAACCTCAAGTCCAACTTCAAGCACAACAAATGCAACAAAA
TGTGATGCAGGCTGGTGCTGTGCCTGTTAGAGGTGGATTGTATAATTTTC
CAAATAATACTATGCAAATTAGAGGAGGTTACCCAAATGGACCTCGAATG
CAATATCAAAATCAACAATATGTACAAATGCAACAGCAAGATGTAATGCA
CCAACAAGGTTATATTCAAAATTACAATCAAAATGTTTATGGAAGCAGTC
CAAACTATCATACTCAACAATTCCGACAAGTTTATCGTCCACAGCAGCCT
GGCTATCCGCCAACCCCACAAGTTTACGCCCTACAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022590XLOC_022590Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037888-proteinTCONS_00037888-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037888-exon-sc0001732-1575043694:7852..8360TCONS_00037888-exon-sc0001732-1575043694:7852..8360Clytia hemisphaericaexon
TCONS_00037888-exon-sc0001732-1575043694:7055..7115TCONS_00037888-exon-sc0001732-1575043694:7055..7115Clytia hemisphaericaexon
TCONS_00037888-exon-sc0001732-1510915933:7852..8360TCONS_00037888-exon-sc0001732-1510915933:7852..8360Clytia hemisphaericaexon
TCONS_00037888-exon-sc0001732-1510915933:7055..7115TCONS_00037888-exon-sc0001732-1510915933:7055..7115Clytia hemisphaericaexon
TCONS_00037888-exon-sc0001732-1491911889:7852..8360TCONS_00037888-exon-sc0001732-1491911889:7852..8360Clytia hemisphaericaexon
TCONS_00037888-exon-sc0001732-1491911889:7055..7115TCONS_00037888-exon-sc0001732-1491911889:7055..7115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001732supercontigsc0001732:7055..8360 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.2969	24.9802	11.6001	11.4382	36.8527	29.5673	25.9151	34.0383	18.1312	21.5692	25.9801	21.0062	27.5281	29.1735	30.6312	44.284	26.0685	30.0237	16.9675	24.8673	18.8659	20.9385	16.7342	20.8049	28.9574	28.5883	16.6802	17.4651	18.9853	27.621
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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