TCONS_00037885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037885
Unique NameTCONS_00037885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037885 ID=TCONS_00037885|Name=TCONS_00037885|organism=Clytia hemisphaerica|type=transcript|length=638bp
GCAGCatttattttacaaaagttGACATTGTGTTACCGAAATCATTGTCC
GTGGAACTCAAAGTatggaaaatgtttggaaaacatcGTGggcaaatcaa
aaacttttcaacCATATGCGGAAATCATTTCAACCCTCAAATAAAAAGAC
TTAAATCATCGACAGAAATTGTTTGCAACAGATGTCCATCAGCTCAATAC
TCAATGTCCATTGGAAGTTTTCTTATAAATTCTTTGGAAAGTGTGAGCAA
ATTGGCAAGTAAAACAAATGCCACTAAACTCAGCAAAATTGCACAAATTG
AAAAAGCAACATGTAAAATCTGCCCAACGGGTTCTCGCTGTCCAGATAAC
GATTTAATAGCACGTGACAATTTCCATGGCTTCTATGAAAATAAAACAGC
GGATTACCAATTCCTTTTATGTCCCGAAAGATACTGTTGTTCATCAACTA
CAAGAAATTGCAAATCTCCAACAACTTGCAATCTAAATCGAGATGGAAGA
CTTTGTGGCAAATGTGAAGAAGGTTACTTCATCAGTTTCTTCAATAATAA
ATGTATCAACATTTCTGAATGTACCAATGAAAGTCAACATTCTTTCTGGA
cgctatttttcatttcattcatcACTTTGGCTGTGCTG
Run BLAST on NCBI

protein sequence of TCONS_00037885-protein

>TCONS_00037885-protein ID=TCONS_00037885-protein|Name=TCONS_00037885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
SIYFTKVDIVLPKSLSVELKVWKMFGKHRGQIKNFSTICGNHFNPQIKRL
KSSTEIVCNRCPSAQYSMSIGSFLINSLESVSKLASKTNATKLSKIAQIE
KATCKICPTGSRCPDNDLIARDNFHGFYENKTADYQFLLCPERYCCSSTT
RNCKSPTTCNLNRDGRLCGKCEEGYFISFFNNKCINISECTNESQHSFWT
LFFISFITLAVL
Run BLAST on NCBI

transcript from alignment at sc0001731:23524..24161

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037885 ID=TCONS_00037885|Name=TCONS_00037885|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at sc0001731:23524..24161 (Clytia hemisphaerica)
CAGCACAGCCAAAGTgatgaatgaaatgaaaaatagcgTCCAGAAAGAAT
GTTGACTTTCATTGGTACATTCAGAAATGTTGATACATTTATTATTGAAG
AAACTGATGAAGTAACCTTCTTCACATTTGCCACAAAGTCTTCCATCTCG
ATTTAGATTGCAAGTTGTTGGAGATTTGCAATTTCTTGTAGTTGATGAAC
AACAGTATCTTTCGGGACATAAAAGGAATTGGTAATCCGCTGTTTTATTT
TCATAGAAGCCATGGAAATTGTCACGTGCTATTAAATCGTTATCTGGACA
GCGAGAACCCGTTGGGCAGATTTTACATGTTGCTTTTTCAATTTGTGCAA
TTTTGCTGAGTTTAGTGGCATTTGTTTTACTTGCCAATTTGCTCACACTT
TCCAAAGAATTTATAAGAAAACTTCCAATGGACATTGAGTATTGAGCTGA
TGGACATCTGTTGCAAACAATTTCTGTCGATGATTTAAGTCTTTTTATTT
GAGGGTTGAAATGATTTCCGCATATGgttgaaaagtttttgatttgccCA
CgatgttttccaaacattttccatACTTTGAGTTCCACGGACAATGATTT
CGGTAACACAATGTCaacttttgtaaaataaatGCTGC

Coding sequence (CDS) from alignment at sc0001731:23524..24161

>TCONS_00037885 ID=TCONS_00037885|Name=TCONS_00037885|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0001731:23524..24161 (Clytia hemisphaerica)
CAGCACAGCCAAAGTgatgaatgaaatgaaaaatagcgTCCAGAAAGAAT
GTTGACTTTCATTGGTACATTCAGAAATGTTGATACATTTATTATTGAAG
AAACTGATGAAGTAACCTTCTTCACATTTGCCACAAAGTCTTCCATCTCG
ATTTAGATTGCAAGTTGTTGGAGATTTGCAATTTCTTGTAGTTGATGAAC
AACAGTATCTTTCGGGACATAAAAGGAATTGGTAATCCGCTGTTTTATTT
TCATAGAAGCCATGGAAATTGTCACGTGCTATTAAATCGTTATCTGGACA
GCGAGAACCCGTTGGGCAGATTTTACATGTTGCTTTTTCAATTTGTGCAA
TTTTGCTGAGTTTAGTGGCATTTGTTTTACTTGCCAATTTGCTCACACTT
TCCAAAGAATTTATAAGAAAACTTCCAATGGACATTGAGTATTGAGCTGA
TGGACATCTGTTGCAAACAATTTCTGTCGATGATTTAAGTCTTTTTATTT
GAGGGTTGAAATGATTTCCGCATATGgttgaaaagtttttgatttgccCA
CgatgttttccaaacattttccatACTTTGAGTTCCACGGACAATGATTT
CGGTAACACAATGTCaacttttgtaaaataaatGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022587XLOC_022587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037885-exon-sc0001731-1491911889:23524..24161TCONS_00037885-exon-sc0001731-1491911889:23524..24161Clytia hemisphaericaexon
TCONS_00037885-exon-sc0001731-1510915933:23524..24161TCONS_00037885-exon-sc0001731-1510915933:23524..24161Clytia hemisphaericaexon
TCONS_00037885-exon-sc0001731-1575043694:23524..24161TCONS_00037885-exon-sc0001731-1575043694:23524..24161Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037885-proteinTCONS_00037885-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001731supercontigsc0001731:23524..24161 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.673115	0	0	0.281619	0	0	0	0	0.232217	0	0	0.170112	0	0	0	0.411139	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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