TCONS_00037881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037881
Unique NameTCONS_00037881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length846

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037881 ID=TCONS_00037881|Name=TCONS_00037881|organism=Clytia hemisphaerica|type=transcript|length=846bp
NNGCTCGTCCCGTTGAATTGAGGTATTTTGTCCAAGGTCACTTGGAGGCC
ATTCATCTTGAAAACGTGGGTTACTGCTCTTCCATTTCCACTTAGAGCAA
CGCTGTCGTTCGAGCTGGTTGCGTATGGCTCTTCGTAAATGTGTTCGTCA
CTCGAAGAAGAGGTGTCGAGGATGTCTCGATGTGCTCGACGCAGCGGAGC
TGGCAGTCTTGGCGTTGTTCTGTCGATTGGCACCGGCGTGTTATTGAGTC
TTCTCCTCACGTTCGCCATCTTGTTTTTCTTTCACAGCTCCTCTTCTCGT
TCTTCAGATTTATCGGTTGAATAATTTATAAGTAATAAAAGTATTACCTG
CAGTTGTTGTACTTTCCTGATTTCTATTTATGCATTCAACTTCTGTTTGA
TGGCACTTCACTGAAAAGTTTGTTTCTTCTTCAACCGCCGTAAATCTTTT
AATTATGCAAGTGTTCGTATCTTGTTTGACTTGAATCAAATGTAATCAAA
GATGTTTGATTAACAGTTCTTTCCAACTTTCCTTCAGGCCTTGAATAATT
GATGCCAAGCGAGGATATAATGTTTATATTTCTCTCCTCGATCAATTCTA
AATATTTGATTTTGTGTAAAATTctcgttttgatagttttttatATTCCC
TGATGTAAAATTTCTTGTGTCCTTTTTCAAAATAACGTGTCCTTATTAAT
CGTGAAATCAACCAAACTACCAATCAACAATAGTNGGGTACACTAATAGA
TTTCAATCAACATCAATTCTGTTTCTCCAATTAAgcaataaatatcaaat
aagCGTAACATAAATAACATCAAATAACTTAGTAACTCTGGCATNN
Run BLAST on NCBI

transcript from alignment at sc0001731:11410..12255

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037881 ID=TCONS_00037881|Name=TCONS_00037881|organism=Clytia hemisphaerica|type=transcript|length=846bp|location=Sequence derived from alignment at sc0001731:11410..12255 (Clytia hemisphaerica)
NNATGCCAGAGTTACTAAGTTATTTGATGTTATTTATGTTACGcttattt
gatatttattgcTTAATTGGAGAAACAGAATTGATGTTGATTGAAATCTA
TTAGTGTACCCNACTATTGTTGATTGGTAGTTTGGTTGATTTCACGATTA
ATAAGGACACGTTATTTTGAAAAAGGACACAAGAAATTTTACATCAGGGA
ATataaaaaactatcaaaacgagAATTTTACACAAAATCAAATATTTAGA
ATTGATCGAGGAGAGAAATATAAACATTATATCCTCGCTTGGCATCAATT
ATTCAAGGCCTGAAGGAAAGTTGGAAAGAACTGTTAATCAAACATCTTTG
ATTACATTTGATTCAAGTCAAACAAGATACGAACACTTGCATAATTAAAA
GATTTACGGCGGTTGAAGAAGAAACAAACTTTTCAGTGAAGTGCCATCAA
ACAGAAGTTGAATGCATAAATAGAAATCAGGAAAGTACAACAACTGCAGG
TAATACTTTTATTACTTATAAATTATTCAACCGATAAATCTGAAGAACGA
GAAGAGGAGCTGTGAAAGAAAAACAAGATGGCGAACGTGAGGAGAAGACT
CAATAACACGCCGGTGCCAATCGACAGAACAACGCCAAGACTGCCAGCTC
CGCTGCGTCGAGCACATCGAGACATCCTCGACACCTCTTCTTCGAGTGAC
GAACACATTTACGAAGAGCCATACGCAACCAGCTCGAACGACAGCGTTGC
TCTAAGTGGAAATGGAAGAGCAGTAACCCACGTTTTCAAGATGAATGGCC
TCCAAGTGACCTTGGACAAAATACCTCAATTCAACGGGACGAGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022583XLOC_022583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037881-exon-sc0001731-1491911889:11410..12255TCONS_00037881-exon-sc0001731-1491911889:11410..12255Clytia hemisphaericaexon
TCONS_00037881-exon-sc0001731-1510915933:11410..12255TCONS_00037881-exon-sc0001731-1510915933:11410..12255Clytia hemisphaericaexon
TCONS_00037881-exon-sc0001731-1575043694:11410..12255TCONS_00037881-exon-sc0001731-1575043694:11410..12255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001731supercontigsc0001731:11410..12255 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.605468	0.684776	1.07519	1.65813	0.525755	0.890269	2.29135	4.35731	1.40799	2.09283	1.89248	1.51124	8.13575	9.77003	6.68261	9.81905	2.71765	4.86889	7.49355	8.61158	5.90174	4.78713	0.953611	3.5632	12.2999	14.2492	2.36403	1.14104	0.375604	1.08075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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