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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037874 ID=TCONS_00037874|Name=TCONS_00037874|organism=Clytia hemisphaerica|type=transcript|length=3869bpRun BLAST on NCBI protein sequence of TCONS_00037874-protein >TCONS_00037874-protein ID=TCONS_00037874-protein|Name=TCONS_00037874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=655bp MTMETGKEKSSKSQLKQKQRNAKKYHKKATNLLKEFEGLNITSTPSVCLFRun BLAST on NCBI transcript from alignment at sc0001729:24577..37876- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00037874 ID=TCONS_00037874|Name=TCONS_00037874|organism=Clytia hemisphaerica|type=transcript|length=13300bp|location=Sequence derived from alignment at sc0001729:24577..37876- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001729:24577..37876- >TCONS_00037874 ID=TCONS_00037874|Name=TCONS_00037874|organism=Clytia hemisphaerica|type=CDS|length=13776bp|location=Sequence derived from alignment at sc0001729:24577..37876- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00037874 vs. Swiss-Prot (Human)
Match: ALKB8 (Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2) HSP 1 Score: 480.33 bits (1235), Expect = 3.858e-153 Identity = 272/662 (41.09%), Postives = 375/662 (56.65%), Query Frame = 1
Query: 1945 KATNLLKEFEGLNITSTPSVCLFIGNGGMLCGQTRENLLELFTSYGVVADLVMLPKKSFALVQMQSIVCAEKAVNALEGHILNNCDNVKQPTSVPLYFQYLDTPDLHFLRKSAENESYPDEDVGEGLIEGLEIYREFIDEEYEKDLFDFFH-RQCCDQEAGENVLKHRSVLHYGYKFLYGSNNIDKEKPMDEGIPRICQQLLDKMLADGLIHELPDQLTINQYRPGQGIPPHVDTHSAFQDGIFSLTLNSPVSMDFTNPEGRTKSVSLARRSLLAMKGESRYLWSHGITPRKYDIVFCKDPTQN-TEDENAKHLTMRERGIRISLTFRKILRGECRCAFSTKCDSQNDDVTKKTWAVPLSQKEASSLEDELVYKVYDEIAEHFSDTRHSPWPRVKKFLCNLPNGSIVADVGCGNGKYLGVNNQLMMMGSDRSVNLASICEERGHQIMVSDCLTLPYRSSCFDGCICIAVIHHLSTEQRRLEAIQELVRITRVRGLILVYVWALEQDTEEENEGVLLGTDGTKI----LNPSYSIDSEKLEALDLETNKYSVSK--ESNDKQ------------YIQIAEGRNTFQQQDLLVPWHLKNTNPSR--------------EEHVFHRFYHVFKRGELETLCRQLPNVEVRDLYLDCGNWCIVLQKT 3828
KA + L EG+ S + L + NGG+ G +R LL + G+V L+M P K ++ + ++ +++A L G + D++ Q + LY +++ LR A L GL + E I E EK L + + D + + LKHR V H+GY+F Y +NN+DK+KP+ G+P IC+ L+K L G I PDQ+TINQY PGQGIP H+DTHSAF+D I SL+L S + MDF +P+G V L RRSLL M GESRYLW+HGIT RK+D V + ++ + LT+ +RG+R S TFRK+ + C C++ CDSQ + + P S KEAS LE E V++VY+EIA HFS TRH+PWP + +FL LP+GSIVAD+GCGNGKYLG+N +L M+G DRS NL IC ER Q V D L +P RS D CI IAVIHH +T +RR+ A+QE+VR+ R G L+YVWA+EQ+ ++ L G ++ +N S+ +E + ++ S S ND Q + + R +F QD+LVPWHLK NP + VFHR+YHVF+ GELE CR + +V + Y D GNWC++LQK
Sbjct: 24 KAKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV--VDDLGQ--KITLYLNFVEKVQWKELRPQA-------------LPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKETPP---SFPESDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGINKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLVEQMRDMGSRDSASSVPRINDSQEGGCNSRQVSNSKLPVHVNRTSFYSQDVLVPWHLKG-NPDKGKPVEPFGPIGSQDPSPVFHRYYHVFREGELEGACRTVSDVRILQSYYDQGNWCVILQKA 664 The following BLAST results are available for this feature:
BLAST of TCONS_00037874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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