TCONS_00037868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037868
Unique NameTCONS_00037868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037868 ID=TCONS_00037868|Name=TCONS_00037868|organism=Clytia hemisphaerica|type=transcript|length=554bp
AGAGCATCAAATACAAAAGCCAGTGTTAATAACTCGTCAACGTCCTTTGA
TGCTGTACAGGTACTTCCACAAAGTGAAATTGGGGTGGCTGACCGGAATA
CTGACATTAAACATTTACATGATGATGTCACTCAAATGAAAGAGGACATC
AAACAAATGAGGATGGACATGGCCCAGATGGCAACTGATGTCGCTAAGTG
GCAGGCAGCAACAACCACCATTGCCAATACATTGAACGATATTTTGAAAA
CTGTAACTGACCAATCCACcacccaacaacaacaacaaatccGAGTACAA
CCGCAACCCAACGATCAACAACAGCAACTCTAATCCATCCCACTTGACCA
TTCAGCAGCCACATTGATTGAACAAGATCTAAGTGCCAATGAAGAGGCTG
TTGAAATGCCATTAGATCTGCAGGAGCTATGGGGAGAAAAATCTACAGTT
AAAAATTTGTCCTTGACCGACATCGAGAGAATTGCTAAAGAGGGAGTCAA
TTTTATGTTGGACAAGGTATTTTCAAGCCATCAGCTTTTAAAATGCAGTA
TTGT
Run BLAST on NCBI

protein sequence of TCONS_00037868-protein

>TCONS_00037868-protein ID=TCONS_00037868-protein|Name=TCONS_00037868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
RASNTKASVNNSSTSFDAVQVLPQSEIGVADRNTDIKHLHDDVTQMKEDI
KQMRMDMAQMATDVAKWQAATTTIANTLNDILKTVTDQSTTQQQQQIRVQ
PQPNDQQQQL
Run BLAST on NCBI

transcript from alignment at sc0001728:29511..30064

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037868 ID=TCONS_00037868|Name=TCONS_00037868|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at sc0001728:29511..30064 (Clytia hemisphaerica)
ACAATACTGCATTTTAAAAGCTGATGGCTTGAAAATACCTTGTCCAACAT
AAAATTGACTCCCTCTTTAGCAATTCTCTCGATGTCGGTCAAGGACAAAT
TTTTAACTGTAGATTTTTCTCCCCATAGCTCCTGCAGATCTAATGGCATT
TCAACAGCCTCTTCATTGGCACTTAGATCTTGTTCAATCAATGTGGCTGC
TGAATGGTCAAGTGGGATGGATTAGAGTTGCTGTTGTTGATCGTTGGGTT
GCGGTTGTACTCggatttgttgttgttgttgggtgGTGGATTGGTCAGTT
ACAGTTTTCAAAATATCGTTCAATGTATTGGCAATGGTGGTTGTTGCTGC
CTGCCACTTAGCGACATCAGTTGCCATCTGGGCCATGTCCATCCTCATTT
GTTTGATGTCCTCTTTCATTTGAGTGACATCATCATGTAAATGTTTAATG
TCAGTATTCCGGTCAGCCACCCCAATTTCACTTTGTGGAAGTACCTGTAC
AGCATCAAAGGACGTTGACGAGTTATTAACACTGGCTTTTGTATTTGATG
CTCT

Coding sequence (CDS) from alignment at sc0001728:29511..30064

>TCONS_00037868 ID=TCONS_00037868|Name=TCONS_00037868|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0001728:29511..30064 (Clytia hemisphaerica)
TTAGAGTTGCTGTTGTTGATCGTTGGGTTGCGGTTGTACTCggatttgtt
gttgttgttgggtgGTGGATTGGTCAGTTACAGTTTTCAAAATATCGTTC
AATGTATTGGCAATGGTGGTTGTTGCTGCCTGCCACTTAGCGACATCAGT
TGCCATCTGGGCCATGTCCATCCTCATTTGTTTGATGTCCTCTTTCATTT
GAGTGACATCATCATGTAAATGTTTAATGTCAGTATTCCGGTCAGCCACC
CCAATTTCACTTTGTGGAAGTACCTGTACAGCATCAAAGGACGTTGACGA
GTTATTAACACTGGCTTTTGTATTTGATGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022575XLOC_022575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037868-exon-sc0001728-1491911889:29511..30064TCONS_00037868-exon-sc0001728-1491911889:29511..30064Clytia hemisphaericaexon
TCONS_00037868-exon-sc0001728-1510915933:29511..30064TCONS_00037868-exon-sc0001728-1510915933:29511..30064Clytia hemisphaericaexon
TCONS_00037868-exon-sc0001728-1575043694:29511..30064TCONS_00037868-exon-sc0001728-1575043694:29511..30064Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037868-proteinTCONS_00037868-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001728supercontigsc0001728:29511..30064 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.100279	0	0	0.138677	0.21917	0.264419	0.123773	0.519938	0	0.312554	0.547895	0.341958	0.142051	0.350355	0.501313	0	0.0791246	0	0	0	0.145489	0.235815	0.321585	0.220817	0	0.141006	0	0	0.232577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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