TCONS_00037865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037865
Unique NameTCONS_00037865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037865 ID=TCONS_00037865|Name=TCONS_00037865|organism=Clytia hemisphaerica|type=transcript|length=463bp
TAGAAACTGGTGAATCAAAGAAATCAACGGAGGTTGTTGATAACACAAAA
GGTAAATCGTTGCCGAGGGATTATTATGACAAGAGAGATTTTCACGTCTG
CAAGACCTCCATGCCCAATCGCCTGCACTTTCTTTGCCTTGTTTATGCAT
CGAAAGAAATCGTGAAGGATGCAGCATCCAAACCAAAAGGAGGCGTTCGA
ACCGAGGATTATCAATCGGCAATAGATTCGTTAATTGAATGGGATCGAGC
AAAATGTCTCGAGGAATACGGATTTCAAAAAGTCATCCGTGAAATATTGA
AAAGACTAACAGAAAAGGTACGGAGGGGTACCAAAAAGGATAAGGACGGA
TGGGCGTCTCTGGTTGAAGAGGCGCGCCAATTATACTTGTACGACCAATA
AGGATTAGTTTTTAGTAATTTATTTCACTGTAAGATGGTTATCTAGATGA
TTATCTAGAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00037865-protein

>TCONS_00037865-protein ID=TCONS_00037865-protein|Name=TCONS_00037865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
ETGESKKSTEVVDNTKGKSLPRDYYDKRDFHVCKTSMPNRLHFLCLVYAS
KEIVKDAASKPKGGVRTEDYQSAIDSLIEWDRAKCLEEYGFQKVIREILK
RLTEKVRRGTKKDKDGWASLVEEARQLYLYDQ
Run BLAST on NCBI

transcript from alignment at sc0001728:42396..43356-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037865 ID=TCONS_00037865|Name=TCONS_00037865|organism=Clytia hemisphaerica|type=transcript|length=961bp|location=Sequence derived from alignment at sc0001728:42396..43356- (Clytia hemisphaerica)
TAGAAACTGGTGAATCAAAGAAATCAACGGAGGTTGTTGATAACACAAAA
GGTATGACAATAAAATTACTGTTGAATCTTAGTTGGATCTTCTCTAAGTA
TTATAAATGGCCTTTCAGGAGCGTGCACAAAAACTTTTGGCTGAAAATTT
GGATTTTTTTCATGCATTTAGTAGCTTACTTTTCTGTTATAAATATTCAG
ATAGTCTCTGTTCTTTTTGTTAGTATCTTTGTTTAACTTGGTCCGGCTCT
TCAATTCTCATAGACAAAAACTGTAATTTAAATGTTTTATAGGTAAATCG
TTGCCGAGGGATTATTATGACAAGAGAGATTTTCACGTCTGCAAGACCTC
CATGCCCAATCGCCTGCACTTTCTTTGCCTTGTTTATGCATCGAAAGAAA
TCGTGAAGGATGCAGCATCCAAACCAAAAGGAGGCGTTCGAACCGAGGAT
TATCAATCGGCAATAGATTCGTTAATTGAATGGGATCGAGCAAAATGTCT
CGAGGAATACGGATTTCAAAAAGTCATCCGTGAAATATTGAAAAGACTAA
CAGAAAAGGTACGGAGGGGTACCAAAAAGGATAAGGACGGATGGGCGTCT
CTGGTTGAAGAGGCGCGCCAATTATACTTGTACGACCAATAAGGATTAGT
TTTTAGTAATTTATTTCATTGAGATTACAGTGTGTCCCGAATAAAGCGGT
CACTTTTCTACTATATATAAAAATCCTCAAAACTCATTTCCATAACTGTG
ATTGGAATTATGATTATAAATTACTTCCTTTTATTTCATTCAATACATTT
TCAATTCCCAAGTCAATTATAAGTATTGTACAAAAGAAAAATGAAGAGAG
TAATTAGCTATCTTGTGAGTAAGTTGAGAGGATTTTTACATATAGTAGAA
TACTGACCGCTTTATTCGGGACACACTGTAAGATGGTTATCTAGATGATT
ATCTAGAAAAA

Coding sequence (CDS) from alignment at sc0001728:42396..43356-

>TCONS_00037865 ID=TCONS_00037865|Name=TCONS_00037865|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0001728:42396..43356- (Clytia hemisphaerica)
GTAAATCGTTGCCGAGGGATTATTATGACAAGAGAGATTTTCACGTCTGC
AAGACCTCCATGCCCAATCGCCTGCACTTTCTTTGCCTTGTTTATGCATC
GAAAGAAATCGTGAAGGATGCAGCATCCAAACCAAAAGGAGGCGTTCGAA
CCGAGGATTATCAATCGGCAATAGATTCGTTAATTGAATGGGATCGAGCA
AAATGTCTCGAGGAATACGGATTTCAAAAAGTCATCCGTGAAATATTGAA
AAGACTAACAGAAAAGGTACGGAGGGGTACCAAAAAGGATAAGGACGGAT
GGGCGTCTCTGGTTGAAGAGGCGCGCCAATTATACTTGTACGACCAATAA
GAAACTGGTGAATCAAAGAAATCAACGGAGGTTGTTGATAACACAAAAGG
TAAATCGTTGCCGAGGGATTATTATGACAAGAGAGATTTTCACGTCTGCA
AGACCTCCATGCCCAATCGCCTGCACTTTCTTTGCCTTGTTTATGCATCG
AAAGAAATCGTGAAGGATGCAGCATCCAAACCAAAAGGAGGCGTTCGAAC
CGAGGATTATCAATCGGCAATAGATTCGTTAATTGAATGGGATCGAGCAA
AATGTCTCGAGGAATACGGATTTCAAAAAGTCATCCGTGAAATATTGAAA
AGACTAACAGAAAAGGTACGGAGGGGTACCAAAAAGGATAAGGACGGATG
GGCGTCTCTGGTTGAAGAGGCGCGCCAATTATACTTGTACGACCAATAAG
AAACTGGTGAATCAAAGAAATCAACGGAGGTTGTTGATAACACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022572XLOC_022572Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037865-proteinTCONS_00037865-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037865-exon-sc0001728-1575043694:43306..43356TCONS_00037865-exon-sc0001728-1575043694:43306..43356Clytia hemisphaericaexon
TCONS_00037865-exon-sc0001728-1575043694:42690..43064TCONS_00037865-exon-sc0001728-1575043694:42690..43064Clytia hemisphaericaexon
TCONS_00037865-exon-sc0001728-1575043694:42396..42432TCONS_00037865-exon-sc0001728-1575043694:42396..42432Clytia hemisphaericaexon
TCONS_00037865-exon-sc0001728-1510915933:43306..43356TCONS_00037865-exon-sc0001728-1510915933:43306..43356Clytia hemisphaericaexon
TCONS_00037865-exon-sc0001728-1510915933:42690..43064TCONS_00037865-exon-sc0001728-1510915933:42690..43064Clytia hemisphaericaexon
TCONS_00037865-exon-sc0001728-1510915933:42396..42432TCONS_00037865-exon-sc0001728-1510915933:42396..42432Clytia hemisphaericaexon
TCONS_00037865-exon-sc0001728-1491911889:43306..43356TCONS_00037865-exon-sc0001728-1491911889:43306..43356Clytia hemisphaericaexon
TCONS_00037865-exon-sc0001728-1491911889:42690..43064TCONS_00037865-exon-sc0001728-1491911889:42690..43064Clytia hemisphaericaexon
TCONS_00037865-exon-sc0001728-1491911889:42396..42432TCONS_00037865-exon-sc0001728-1491911889:42396..42432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001728supercontigsc0001728:42396..43356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.59704	5.52073	4.464	2.04685	4.33094	4.51011	2.92719	6.68452	11.3337	7.7145	18.2201	15.9188	11.9674	15.9014	12.4445	12.1765	7.2577	10.6136	14.7437	10.2887	9.35784	7.82669	8.33886	10.504	6.22833	5.44523	7.91005	6.27246	4.86436	4.74982
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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