TCONS_00037864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037864
Unique NameTCONS_00037864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037864 ID=TCONS_00037864|Name=TCONS_00037864|organism=Clytia hemisphaerica|type=transcript|length=1288bp
GTTCGCTTTTTGGCTGACCCACCTCCCCCCTCGACGACGAACGTACTTTT
TAAATGCTCCCACAGATATATTAAATTGTTTGATACTATCAATGCATTTT
TGATATCTTAGAAACTGGTGAATCAAAGAAATCAACGGAGGTTGTTGATA
ACACAAAAGGTAAATCGTTGCCGAGGGATTATTATGACAAGAGAGATTTT
CACGTCTGCAAGACCTCCATGCCCAATCGCCTGCACTTTCTTTGCCTTGT
TTATGCATCGAAAGAAATCGTGAAGGATGCAGCATCCAAACCAAAAGGAG
GCGTTCGAACCGAGGATTATCAATCGGCAATAGATTCGTTAATTGAATGG
GATCGAGCAAAATGTCTCGAGGAATACGGATTTCAAAAAGTCATCCGTGA
AATATTGAAAAGACTAACAGAAAAGGTACGGAGGGGTACCAAAAAGGATA
AGGACGGATGGGCGTCTCTGGTTGAAGAGGCGCGCCAATTATACTTGTAC
GACCAATAAGGATTAGTTTTTAGTAATTTATTTCATTGAGATTACAGTGT
GTCCCGAATAAAGCGGTCACTTTTCTACTATATATAAAAATCCTCAAAAC
TCATTTCCATAACTGTGATTGGAATTATGATTATAAATTACTTCCTTTTA
TTTCATTCAATACATTTTCAATTCCCAAGTCAATTATAAGTATTGTACAA
AAGAAAAATGAAGAGAGTAATTAGCTATCTTGTGAGTAAGTTGAGAGGAT
TTTTACATATAGTAGAATACTGACCGCTTTATTCGGGACACACTGTAAGA
TGGTTATCTAGATGATTATCTAGAAAAATTCATGGCAAAGCTTGTTATCA
AAGGTTTACAGCTGTTATTGTCTTTGTTTCTTTCTTTTGTTTTTCGTTTC
TTTCTTTTGTCTTTCTTTTGAAAACCTTACTTATAGGTTTAAAGATTTGT
CGTCTCTTCTTCAATCGATTTTAAATATTTTATACTGGAGTTTTGTTAGG
GTGAGAGGTAATTTTTTATCTTCATATACGTGATTTTATTTAAATCCTTT
ATCTTTTATCATAGGAACCCTTTATTTATGTCGTTTGTCAGTTTAAATTT
GTGCATAATGAAAACGAGCACTGCATTTATGTATTTCTAAAAAAAAAGAA
ATATCATCCAACTTGGTAGTTCTAACAAAGTTCTATTATCAGTTTATAGT
ACTGTTTATTGTTTGTTATTTCAATGCAACCCTTATTTTGTCACGGGAAC
atgtttaaaaacattttcaattgaaaTGGTTATAATAT
Run BLAST on NCBI

transcript from alignment at sc0001728:40823..43464-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037864 ID=TCONS_00037864|Name=TCONS_00037864|organism=Clytia hemisphaerica|type=transcript|length=2642bp|location=Sequence derived from alignment at sc0001728:40823..43464- (Clytia hemisphaerica)
GTTCGCTTTTTGGCTGACCCACCTCCCCCCTCGACGACGAACGTACTTTT
TAAATGCTCCCACAGATATATTAAATTGTTTGATACTATCAATGCATTTT
TGATATCTTAGAAACTGGTGAATCAAAGAAATCAACGGAGGTTGTTGATA
ACACAAAAGGTATGACAATAAAATTACTGTTGAATCTTAGTTGGATCTTC
TCTAAGTATTATAAATGGCCTTTCAGGAGCGTGCACAAAAACTTTTGGCT
GAAAATTTGGATTTTTTTCATGCATTTAGTAGCTTACTTTTCTGTTATAA
ATATTCAGATAGTCTCTGTTCTTTTTGTTAGTATCTTTGTTTAACTTGGT
CCGGCTCTTCAATTCTCATAGACAAAAACTGTAATTTAAATGTTTTATAG
GTAAATCGTTGCCGAGGGATTATTATGACAAGAGAGATTTTCACGTCTGC
AAGACCTCCATGCCCAATCGCCTGCACTTTCTTTGCCTTGTTTATGCATC
GAAAGAAATCGTGAAGGATGCAGCATCCAAACCAAAAGGAGGCGTTCGAA
CCGAGGATTATCAATCGGCAATAGATTCGTTAATTGAATGGGATCGAGCA
AAATGTCTCGAGGAATACGGATTTCAAAAAGTCATCCGTGAAATATTGAA
AAGACTAACAGAAAAGGTACGGAGGGGTACCAAAAAGGATAAGGACGGAT
GGGCGTCTCTGGTTGAAGAGGCGCGCCAATTATACTTGTACGACCAATAA
GGATTAGTTTTTAGTAATTTATTTCATTGAGATTACAGTGTGTCCCGAAT
AAAGCGGTCACTTTTCTACTATATATAAAAATCCTCAAAACTCATTTCCA
TAACTGTGATTGGAATTATGATTATAAATTACTTCCTTTTATTTCATTCA
ATACATTTTCAATTCCCAAGTCAATTATAAGTATTGTACAAAAGAAAAAT
GAAGAGAGTAATTAGCTATCTTGTGAGTAAGTTGAGAGGATTTTTACATA
TAGTAGAATACTGACCGCTTTATTCGGGACACACTGTAAGATGGTTATCT
AGATGATTATCTAGAAAAATTCATGGCAAAGCTTGTTATCAAAGGTTTAC
AGCTGTTATTGTCTTTGTTTCTTTCTTTTGTTTTTCGTTTCTTTCTTTTG
TCTTTCTTTTGAAAACCTTACTTATAGGTTTAAAGATTTGTCGTCTCTTC
TTCAATCGATTTTAAATATTTTATACTGGAGTTTTGTTAGGGTGAGAGGT
AATTTTTTATCTTCATATACGTGATTTTATTTAAATCCTTTATCTTTTAT
CATAGGAACCCTTTATTTATGTCGTTTGTCAGTTTAAATTTGTGCATAAT
GAAAACGAGCACTGCATTTATGTATTTCTAAAAAAAAAGAAATATCATCC
AACTTGGTAGTTCTAACAAAGTTCTATTATCAGTTTATAGTACTGTTTAT
TGTTTGTTATTTCAATGCAACCCTTATTTTGTCACATAAACATCTTTAAA
AACATTTTTACTTCAAATGGTTATATATACTCAAGCTGCCAATTAGCAAG
AATATTCAAGCTCCAAGCTAGCCTTGGTCAATCTTATTCTAAACTACCCC
CAGGGTTAGACTAACTCCCATCCGTCCTAAATCTTGTGGGACACTTCTTT
GCAAAGAATTTGACCCCTTTCATTCAGATTAAATGCTTGGTAGGGAAGCC
TATGGATTCTTATTGTCCAATTATAGTTTGCACCGGAAATGACCCAATCT
AATTCTACCATTTCTCAATCCTGATATTGTACCGAGGCACACAACGGTCT
GTGGTGGATTGAAAAGTTGAAATAACAGGACGATACCTACCCTATAACGA
GGATAGCATCCCTCGGTTCAAACTTTAATAGTTTCGAACCTTCCTAGGTG
CTTCTTTCTTTATTAGAATTATGCCAATCCAGGAGCCTCTCCTAGTTGCC
TGACCGGACTCCTGGTCGGTCNTAATAGTTTCGAACCTTCCTAGGTGCTT
CTTTCTTTATTAGAATTATGCCAATCCAGGAGCCTCTCCTAGTTGCCTGA
CCGGACTCCTGGTCGGTCTCAAGAACCAGATCATATTCGGGACACAATAT
AAAAAAAGATGACGAGCTGTCCTATCAGTTCCAGCTTTCTCGTTAAGGGC
TAGACATTGAATGGCGTCAATATCCGAAAACCGGTCTTGCCATGGTACGC
TTAGCTAGGCTCTGATAGGGTTGCCTGGACGGAATTCCGGTTGGCAGGCC
CTTTGGACTGTAATAACTGCCTATCATTAGAACTATGTGAATTCAAAAAG
ACTCTTCTCGGTTCTTGAGGTCAGTCATGGGCCTATAACAGGTGTCTAAA
GACTGACTGGGGATAGGGAGACTTTTGATTTATTGGAAAATCATTAGAAT
TTCAAATGACGTGTTCTAGAGACAAAATTAAGGTTGTCTTATAAAATTAT
AATTCCTTGAGAAGGGTAGCTATTAACTTCAAATAACGACTAATTTCAAT
GAATTTGAAATGAATAAAAGCCTCTTATTGGTTGCGCTTAATTGATATTT
TACACATTTTACATTTAGAAACCTTCAACTCAACCCTTATGTTGTCACGG
GAACATGTTTAAAAACATTTTCAATTGAAATGGTTATAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022572XLOC_022572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037864-exon-sc0001728-1575043694:43306..43464TCONS_00037864-exon-sc0001728-1575043694:43306..43464Clytia hemisphaericaexon
TCONS_00037864-exon-sc0001728-1575043694:41980..43064TCONS_00037864-exon-sc0001728-1575043694:41980..43064Clytia hemisphaericaexon
TCONS_00037864-exon-sc0001728-1575043694:40823..40866TCONS_00037864-exon-sc0001728-1575043694:40823..40866Clytia hemisphaericaexon
TCONS_00037864-exon-sc0001728-1510915933:43306..43464TCONS_00037864-exon-sc0001728-1510915933:43306..43464Clytia hemisphaericaexon
TCONS_00037864-exon-sc0001728-1510915933:41980..43064TCONS_00037864-exon-sc0001728-1510915933:41980..43064Clytia hemisphaericaexon
TCONS_00037864-exon-sc0001728-1510915933:40823..40866TCONS_00037864-exon-sc0001728-1510915933:40823..40866Clytia hemisphaericaexon
TCONS_00037864-exon-sc0001728-1491911889:43306..43464TCONS_00037864-exon-sc0001728-1491911889:43306..43464Clytia hemisphaericaexon
TCONS_00037864-exon-sc0001728-1491911889:41980..43064TCONS_00037864-exon-sc0001728-1491911889:41980..43064Clytia hemisphaericaexon
TCONS_00037864-exon-sc0001728-1491911889:40823..40866TCONS_00037864-exon-sc0001728-1491911889:40823..40866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001728supercontigsc0001728:40823..43464 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2471	1.42579	1.07119	0.428725	2.2617	1.7414	2.10093	2.22566	3.26143	2.19945	3.57259	4.26736	2.80282	2.52463	2.46629	2.46327	2.3889	2.2831	2.33139	2.91799	3.20151	3.04205	2.07088	2.59997	1.56981	1.64825	2.24071	1.69912	1.95694	1.41026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top