TCONS_00037863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037863
Unique NameTCONS_00037863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037863 ID=TCONS_00037863|Name=TCONS_00037863|organism=Clytia hemisphaerica|type=transcript|length=439bp
AAGTTGCTCAAAGTTGAAGAAAGTGACATTGCAGGATTTTAATGATTTGT
GGGGACTTCTCAAGAAGAAACTGGCAAAAGTTATTGTAAAGCGGTCAAAA
TGTGTACGTGATGAAATCTTTCACAAAACACAACAGCATTTCCGTGGATC
AAAGCAGCTAACAATCCACGATTTGGGATATTGGAGATCATatgAATTAC
CAGAAGGGGTAGTAAATCACTTAATGTCCAGCATTGAGGACACCTTTGAA
GTCAATTTTAAATATCGATTCGACGTGTTGGAGCCTGTGTGCTTCAAATT
CTTTATGATAGCACACTTTGGAATAAGCAGCCGCCAGGCACAGTGGTTCA
CTGAACACTATGATTCCATGTACGATGATGAAAAGCTAGATGAAATTgAT
CATGAGCACCCAGATCCCTGGGATGAAGATATAAACAAA
Run BLAST on NCBI

protein sequence of TCONS_00037863-protein

>TCONS_00037863-protein ID=TCONS_00037863-protein|Name=TCONS_00037863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
SCSKLKKVTLQDFNDLWGLLKKKLAKVIVKRSKCVRDEIFHKTQQHFRGS
KQLTIHDLGYWRSYELPEGVVNHLMSSIEDTFEVNFKYRFDVLEPVCFKF
FMIAHFGISSRQAQWFTEHYDSMYDDEKLDEIDHEHPDPWDEDINK
Run BLAST on NCBI

transcript from alignment at sc0001728:20179..22514-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037863 ID=TCONS_00037863|Name=TCONS_00037863|organism=Clytia hemisphaerica|type=transcript|length=2336bp|location=Sequence derived from alignment at sc0001728:20179..22514- (Clytia hemisphaerica)
AAGTTGCTCAAAGTTGAAGAAAGTGACATTGCAGGATTTTAATGATTTGT
GGGGACTTCTCAAGAAGAAACTGGCAAAAGTTATTGTAAAGCGGTCAAAA
TGTGTACGTGATGAAATCTTTCACAAAACACAACAGCATTTCCGTGGATC
AAAGCAGCTAACAATCCACGATTTGGGATATTGGAGATCATGTATGTTGT
TTCAAAAGTCAATTGAGAAATATTAATCAATCTGTCTTTGCATCTTTTTA
CTTTTTAATCAACTAATTTTCTAATTTCAACAAATTTTTGTTAACAAAAA
ATGCGTTGTTACTAAAAGTGGTAACACAGGGTAACACATGGTAACAGGGG
GTAACACTAGGGTAACAGGGGGTAACACATGGGTAACAGGGGTAACACTA
GGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CATGTGTTACCCATGTGTTACCCATGTGTTACCCCCTGTTACCCTAGTGT
TACCCCCTGTTACCATGTGTTACCCTGTGTTACCACTTTTAGTAACAACG
CAAAAAATGGTATCCAGATTTCCTAGAGATATTCTATGGTTTATCATTGA
AAAATAATAGTCAAAAGAAGAAACAGTGAGTGCATTTAAAGTAAATTTTA
TTATTTTTAGATGAATTACCAGAAGGGGTAGTAAATCACTTAATGTCCAG
CATTGAGGACACCTTTGAAGTCAATTTTAAATATCGATTCGACGTGTTGG
AGCCTGTGTGCTTCAAATTCTTTATGATAGCACACTTTGGAATAAGCAGC
CGCCAGGCACAGTGGTTCACTGAACACTATGGTAAGTGTTTCTTTCATTT
ACTCGATCTAAAAGTAGATTGTTTGACATCTTTTTTAAAGATTTCTTCCA
AAATATGGCAAAAAATATTCATCATTTCATTGCCGGAAAATACATCCTAA
TGAATGGCTTATCAGGTTTCATAAAGCTCAAAAAAACACTTCTATAAATT
CTATTTGTTTACAATATTTAGATTCCATGTACGATGATGAAAAGCTAGAT
GAAATTGGTAAAATATATTTTGTTTTCAATTTTTTCTGAAGTTTTGAGCT
TTCTCTATCTGTTCTCGTGAAACTAAGACTTCTTGTTTGACATGAATACT
TAGAACAAAATATCCTATTTTTCATAAATATCTTTGATTATTTAGATCAT
GAGCACCCAGATCCCTGGGATGAAGATATAAACAAA

Coding sequence (CDS) from alignment at sc0001728:20179..22514-

>TCONS_00037863 ID=TCONS_00037863|Name=TCONS_00037863|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0001728:20179..22514- (Clytia hemisphaerica)
ATCATGAGCACCCAGATCCCTGGGATGAAGATATAAACAAAATTCCATGT
ACGATGATGAAAAGCTAGATGAAATTGATGAATTACCAGAAGGGGTAGTA
AATCACTTAATGTCCAGCATTGAGGACACCTTTGAAGTCAATTTTAAATA
TCGATTCGACGTGTTGGAGCCTGTGTGCTTCAAATTCTTTATGATAGCAC
ACTTTGGAATAAGCAGCCGCCAGGCACAGTGGTTCACTGAACACTATGAG
TTGCTCAAAGTTGAAGAAAGTGACATTGCAGGATTTTAATGATTTGTGGG
GACTTCTCAAGAAGAAACTGGCAAAAGTTATTGTAAAGCGGTCAAAATGT
GTACGTGATGAAATCTTTCACAAAACACAACAGCATTTCCGTGGATCAAA
GCAGCTAACAATCCACGATTTGGGATATTGGAGATCATATCATGAGCACC
CAGATCCCTGGGATGAAGATATAAACAAAATTCCATGTACGATGATGAAA
AGCTAGATGAAATTGATGAATTACCAGAAGGGGTAGTAAATCACTTAATG
TCCAGCATTGAGGACACCTTTGAAGTCAATTTTAAATATCGATTCGACGT
GTTGGAGCCTGTGTGCTTCAAATTCTTTATGATAGCACACTTTGGAATAA
GCAGCCGCCAGGCACAGTGGTTCACTGAACACTATGAGTTGCTCAAAGTT
GAAGAAAGTGACATTGCAGGATTTTAATGATTTGTGGGGACTTCTCAAGA
AGAAACTGGCAAAAGTTATTGTAAAGCGGTCAAAATGTGTACGTGATGAA
ATCTTTCACAAAACACAACAGCATTTCCGTGGATCAAAGCAGCTAACAAT
CCACGATTTGGGATATTGGAGATCATATCATGAGCACCCAGATCCCTGGG
ATGAAGATATAAACAAAATTCCATGTACGATGATGAAAAGCTAGATGAAA
TTGATGAATTACCAGAAGGGGTAGTAAATCACTTAATGTCCAGCATTGAG
GACACCTTTGAAGTCAATTTTAAATATCGATTCGACGTGTTGGAGCCTGT
GTGCTTCAAATTCTTTATGATAGCACACTTTGGAATAAGCAGCCGCCAGG
CACAGTGGTTCACTGAACACTATGAGTTGCTCAAAGTTGAAGAAAGTGAC
ATTGCAGGATTTTAATGATTTGTGGGGACTTCTCAAGAAGAAACTGGCAA
AAGTTATTGTAAAGCGGTCAAAATGTGTACGTGATGAAATCTTTCACAAA
ACACAACAGCATTTCCGTGGATCAAAGCAGCTAACAATCCACGATTTGGG
ATATTGGAGATCATATCATGAGCACCCAGATCCCTGGGATGAAGATATAA
ACAAAATTCCATGTACGATGATGAAAAGCTAGATGAAATTGATGAATTAC
CAGAAGGGGTAGTAAATCACTTAATGTCCAGCATTGAGGACACCTTTGAA
GTCAATTTTAAATATCGATTCGACGTGTTGGAGCCTGTGTGCTTCAAATT
CTTTATGATAGCACACTTTGGAATAAGCAGCCGCCAGGCACAGTGGTTCA
CTGAACACTATGAGTTGCTCAAAGTTGAAGAAAGTGACATTGCAGGATTT
TAATGATTTGTGGGGACTTCTCAAGAAGAAACTGGCAAAAGTTATTGTAA
AGCGGTCAAAATGTGTACGTGATGAAATCTTTCACAAAACACAACAGCAT
TTCCGTGGATCAAAGCAGCTAACAATCCACGATTTGGGATATTGGAGATC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022571XLOC_022571Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037863-exon-sc0001728-1575043694:22324..22514TCONS_00037863-exon-sc0001728-1575043694:22324..22514Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1575043694:20584..20754TCONS_00037863-exon-sc0001728-1575043694:20584..20754Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1575043694:20358..20393TCONS_00037863-exon-sc0001728-1575043694:20358..20393Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1575043694:20179..20219TCONS_00037863-exon-sc0001728-1575043694:20179..20219Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1510915933:22324..22514TCONS_00037863-exon-sc0001728-1510915933:22324..22514Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1510915933:20584..20754TCONS_00037863-exon-sc0001728-1510915933:20584..20754Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1510915933:20358..20393TCONS_00037863-exon-sc0001728-1510915933:20358..20393Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1510915933:20179..20219TCONS_00037863-exon-sc0001728-1510915933:20179..20219Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1491911889:22324..22514TCONS_00037863-exon-sc0001728-1491911889:22324..22514Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1491911889:20584..20754TCONS_00037863-exon-sc0001728-1491911889:20584..20754Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1491911889:20358..20393TCONS_00037863-exon-sc0001728-1491911889:20358..20393Clytia hemisphaericaexon
TCONS_00037863-exon-sc0001728-1491911889:20179..20219TCONS_00037863-exon-sc0001728-1491911889:20179..20219Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037863-proteinTCONS_00037863-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001728supercontigsc0001728:20179..22514 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.416032	0.821886	0.99157	1.67093	0.909891	0.644027	1.25022	0.616382	0.718113	0.319614	0	0	0	0	0	0	0	0	0	0	0.496838	1.03464	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top