TCONS_00037862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037862
Unique NameTCONS_00037862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037862 ID=TCONS_00037862|Name=TCONS_00037862|organism=Clytia hemisphaerica|type=transcript|length=478bp
GTCGATATCTTTCTTATCCGCTATCTCTTTCGTGTCTTCCGTAGTTTCAT
ATAGATGATGTATCATGAGATTACACGAAGTCGCTTCAATCCATTTTTTa
tccttattttctttttcaaggaaacGCTTTATCGTTTTCGTTTGCGACTC
AAGATGTTTCTTTGTTATTTCTGAATAACTTGATTTTTCACAAGCAATTT
CATTCACAGACGAAGATTTCTTGTTTgcgattttatttattttgcctTCC
AGcacgtcaatttttttattgaaggtGTTTTCAATTTCTGCGACTGCTTT
ATTCACATTGTTAGTTGACACTTCAGccttcaaatttgaaatgtccTCCC
GTTGTGCTTTTATTATGTTCTCACATGCATCGATATCTTTTTGTAAATCT
CCAACAGACTTgaagttcaatttctttttcaattctgGTGTTATGATCAC
ACAGCTCATGCATTGATAGCTTCTAGAT
Run BLAST on NCBI

protein sequence of TCONS_00037862-protein

>TCONS_00037862-protein ID=TCONS_00037862-protein|Name=TCONS_00037862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
SRSYQCMSCVIITPELKKKLNFKSVGDLQKDIDACENIIKAQREDISNLK
AEVSTNNVNKAVAEIENTFNKKIDVLEGKINKIANKKSSSVNEIACEKSS
YSEITKKHLESQTKTIKRFLEKENKDKKWIEATSCNLMIHHLYETTEDTK
EIADKKDID
Run BLAST on NCBI

transcript from alignment at sc0001727:25704..26181

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037862 ID=TCONS_00037862|Name=TCONS_00037862|organism=Clytia hemisphaerica|type=transcript|length=478bp|location=Sequence derived from alignment at sc0001727:25704..26181 (Clytia hemisphaerica)
ATCTAGAAGCTATCAATGCATGAGCTGTGTGATCATAACACcagaattga
aaaagaaattgaacttcAAGTCTGTTGGAGATTTACAAAAAGATATCGAT
GCATGTGAGAACATAATAAAAGCACAACGGGAggacatttcaaatttgaa
ggCTGAAGTGTCAACTAACAATGTGAATAAAGCAGTCGCAGAAATTGAAA
ACaccttcaataaaaaaattgacgtgCTGGAaggcaaaataaataaaatc
gcAAACAAGAAATCTTCGTCTGTGAATGAAATTGCTTGTGAAAAATCAAG
TTATTCAGAAATAACAAAGAAACATCTTGAGTCGCAAACGAAAACGATAA
AGCgtttccttgaaaaagaaaataaggatAAAAAATGGATTGAAGCGACT
TCGTGTAATCTCATGATACATCATCTATATGAAACTACGGAAGACACGAA
AGAGATAGCGGATAAGAAAGATATCGAC

Coding sequence (CDS) from alignment at sc0001727:25704..26181

>TCONS_00037862 ID=TCONS_00037862|Name=TCONS_00037862|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0001727:25704..26181 (Clytia hemisphaerica)
TCTAGAAGCTATCAATGCATGAGCTGTGTGATCATAACACcagaattgaa
aaagaaattgaacttcAAGTCTGTTGGAGATTTACAAAAAGATATCGATG
CATGTGAGAACATAATAAAAGCACAACGGGAggacatttcaaatttgaag
gCTGAAGTGTCAACTAACAATGTGAATAAAGCAGTCGCAGAAATTGAAAA
CaccttcaataaaaaaattgacgtgCTGGAaggcaaaataaataaaatcg
cAAACAAGAAATCTTCGTCTGTGAATGAAATTGCTTGTGAAAAATCAAGT
TATTCAGAAATAACAAAGAAACATCTTGAGTCGCAAACGAAAACGATAAA
GCgtttccttgaaaaagaaaataaggatAAAAAATGGATTGAAGCGACTT
CGTGTAATCTCATGATACATCATCTATATGAAACTACGGAAGACACGAAA
GAGATAGCGGATAAGAAAGATATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022570XLOC_022570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037862-exon-sc0001727-1491911889:25704..26181TCONS_00037862-exon-sc0001727-1491911889:25704..26181Clytia hemisphaericaexon
TCONS_00037862-exon-sc0001727-1510915933:25704..26181TCONS_00037862-exon-sc0001727-1510915933:25704..26181Clytia hemisphaericaexon
TCONS_00037862-exon-sc0001727-1575043694:25704..26181TCONS_00037862-exon-sc0001727-1575043694:25704..26181Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037862-proteinTCONS_00037862-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001727supercontigsc0001727:25704..26181 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17824	0.694875	1.15243	2.06224	0.398947	0.0562495	0.187408	0.550961	0	0.403479	0	0.185806	0.200936	0.523786	0.112499	0.103633	0.165675	0.413749	0	0	0	1.10482	0	0.753398	0.320106	0.798368	1.28862	0.564814	0.934141	0.935974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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