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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037859 ID=TCONS_00037859|Name=TCONS_00037859|organism=Clytia hemisphaerica|type=transcript|length=503bp
tCTTAAGCAAAATTTAATAATGTAACCCCCTGACCAGATGCCAGATTCGC
TTtacgaaatcaaaacattcaaaacaagTTTTCAATTTTGTGGTTTCTTT
GATTTGAGTGTTAAAGTTGGAGTGGTGGAAGTGATAAGCTGATCTGGAGT
CTGGTGTAAGAAAAATGGAAAGGAGAAACTTAATTCAACCACAAAATTAT
GATGTGTCGTGATGCTGTATATCATAACATAAACTCCACGAAACCATTTC
TCGTCAAGTAAATCAAGGGTTAAATGACTTTATCAATCACTGAAACTGTA
CAACTCTCTGCACCATAAAGGAAAAATCCAGATAGCCTACACCACATGAT
CTGACAGACAAAACGAGAAAGGTATTTATCAcagaattaaattaaatttt
ttcaacaattcCTAGTCCATTTGCTTTACAAGGTAACCTTTTCTCTCGAA
ACTAGAGATCAAATAAAATTtcccggaggggggggggcacttagtcAAAA
TTG Run BLAST on NCBI transcript from alignment at sc0001727:42275..43356+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037859 ID=TCONS_00037859|Name=TCONS_00037859|organism=Clytia hemisphaerica|type=transcript|length=1082bp|location=Sequence derived from alignment at sc0001727:42275..43356+ (Clytia hemisphaerica)
tCTTAAGCAAAATTTAATAATGTAACCCCCTGACCAGATGCCAGATTCGC
TTtacgaaatcaaaacattcaaaacaagTTTTCAATTTTGTGGTTTCTTT
GATTTGAGTGTTAAAGTTGGAGTGGTGGAAGTGATAAGCTGATCTGGAGT
CTGGTGTAAGAAAAATGGAAAGGAGAAACTTAATTCAACCACAAAATTAT
GATGTGTAAGTATTACTTCACCGATTTATATCTAGTTTTTGCTATTTCTA
TATATCCTAAACTAAGGGTCGATCAGACAACACTCATTTAaggatttttt
tgcatctttttgcattttgtttctttaatttgCCTTTGCGATTTGTCATG
TCATTCACCCAGATCAGGAGtatattttctacttttttttacttttttgt
aaatgtTGTTTTCCTTTGCCGTTCATTTGttgtcaaaatgtttgactCTT
TTGTCTTTCTACACTACAGGTCGTGATGCTGTATATCATAACATAAACTC
CACGAAACCATTTCTCGTCAAGTAAATCAAGGGTAAGTAAGGAAATTATC
TGCTTATTTGTAttctactttttttaaaagaactataAGCTAGATAATTT
GCTATATATGTaggtatttcaactttttttttgagcaatgaaatgttttt
tgCAAAGCTTTCATCTCAATTTTTGACTATTCTGAGATATGattaaaatg
attatctttgttTGTGAATGAATTATATGGAGCAATATACAtcagttttg
tttatttttatgcaGGTTAAATGACTTTATCAATCACTGAAACTGTACAA
CTCTCTGCACCATAAAGNNNNNNNNNNNNNNNNNNNNNTTTATGCAGGTT
AAATGACTTTATCAATCACTGAAACTGTACAACTCTCTGCACCATAAAGG
AAAAATCCAGATAGCCTACACCACATGATCTGACAGACAAAACGAGAAAG
GTATTTATCAcagaattaaattaaattttttcaacaattcCTAGTCCATT
TGCTTTACAAGGTAACCTTTTCTCTCGAAACTAGAGATCAAATAAAATTt
cccggaggggggggggcacttagtcAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037859-exon-sc0001727-1491911889:42275..42479 | TCONS_00037859-exon-sc0001727-1491911889:42275..42479 | Clytia hemisphaerica | exon |
| TCONS_00037859-exon-sc0001727-1510915933:42275..42479 | TCONS_00037859-exon-sc0001727-1510915933:42275..42479 | Clytia hemisphaerica | exon |
| TCONS_00037859-exon-sc0001727-1575043694:42275..42479 | TCONS_00037859-exon-sc0001727-1575043694:42275..42479 | Clytia hemisphaerica | exon |
| TCONS_00037859-exon-sc0001727-1491911889:42744..42806 | TCONS_00037859-exon-sc0001727-1491911889:42744..42806 | Clytia hemisphaerica | exon |
| TCONS_00037859-exon-sc0001727-1510915933:42744..42806 | TCONS_00037859-exon-sc0001727-1510915933:42744..42806 | Clytia hemisphaerica | exon |
| TCONS_00037859-exon-sc0001727-1575043694:42744..42806 | TCONS_00037859-exon-sc0001727-1575043694:42744..42806 | Clytia hemisphaerica | exon |
| TCONS_00037859-exon-sc0001727-1491911889:43122..43356 | TCONS_00037859-exon-sc0001727-1491911889:43122..43356 | Clytia hemisphaerica | exon |
| TCONS_00037859-exon-sc0001727-1510915933:43122..43356 | TCONS_00037859-exon-sc0001727-1510915933:43122..43356 | Clytia hemisphaerica | exon |
| TCONS_00037859-exon-sc0001727-1575043694:43122..43356 | TCONS_00037859-exon-sc0001727-1575043694:43122..43356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001727 | supercontig | sc0001727:42275..43356 + |
Blast
The following BLAST results are available for this feature:
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