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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037857 ID=TCONS_00037857|Name=TCONS_00037857|organism=Clytia hemisphaerica|type=transcript|length=907bp
tcaatGTTCGTGTCTTACTGATTAGACGTCGAAGACCACAGGGTCTTAAT
TTACTGCAAACTGGAGAAAATGGATTTTAACTATGGCATACTTTTGTTGa
tatactttttggaaaaaacttGCCTTCATTGGAGAACTTGTGACTATAAA
TATCGAATTTTCCGACCCATGAAATTGCTTGCATTTTAACAGAGGAAACT
TCAAAGAATCTTCTAAAGAAGGAATTACAgatgtatcatttttttataag
aagttaTGGTTTCTAGAATATTTGACCTATTTCAGTGAAAACTACATGAC
ACACAGAGTATAACGAGAAGAGATGCTTAAATTTGGTGGCAATATCAATT
GCTTTTTGATGAATGTTACATCTAACAAATCCCAAATTGTAAACGTACTT
TGGAATCCGATTGCAAAGTTTCACTATGGACGTAGTCTGTAAAGAGAAGg
taataatttttcattctATCATCTTTTGCAAGTCTGATTTTGGAATGTTC
TTGAGGGCTGAGTTGAATTTGATCAAATAACTAGACTGCATGATTTTTGT
ATACAAATTTCTTACCTTCAACATAGTATGGACATGGTTTCCTACAAAGC
TCTTCCCATGATAGTTCTGGCGACAAACGTTAAATGACTTGATGACATTA
TCCAACTCCTTTGATAGAGAACTTTTGCCTTATTCCGATTTAGGGTACCA
GCAATGTTGTTGTTCAACAGCTCATCTAATTCCTTTTGCTATAAATAATG
GATAaggaaaaattaattcaaaataaatcGTGCCTTTGTAATTTAACTAA
AGctttaagaaaatatatttacgcaagttttttgaattttttttaccttt
tcctCCTTCTTGTTCCTGAAAAATTCTTCTCTGGGTGAGTACACCTTTTT
GATGcgc Run BLAST on NCBI transcript from alignment at sc0001727:40087..41801+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037857 ID=TCONS_00037857|Name=TCONS_00037857|organism=Clytia hemisphaerica|type=transcript|length=1715bp|location=Sequence derived from alignment at sc0001727:40087..41801+ (Clytia hemisphaerica)
tcaatGTTCGTGTCTTACTGATTAGACGTCGAAGACCACAGGGTCTTAAT
TTACTGCAAACTGGAGAAAATGGATTTTAACTATGGCATACTTTTGTTGa
tatactttttggaaaaaacttGCCTTCATTGGAGAACTTGTGACTATAAA
TATCGAATTTTCCGACCCATGAAATTGCTTGCATTTTAACAGAGGAAACT
TCAAAGAATCTTCTAAAGAAGGAATTACAgatgtatcatttttttataag
aagttaTGGTTTCTAGAATATTTGACCTATTTCAGTGAAAACTACGTCAG
TACTGTATATTACAATTTTCTCGTAAACTTCATTGAAAACCACCTTGAAC
TTTGTTATTTCTGACATTTTTAGCTACATTTTATGATTGAGATTTGCTAG
ACATTTAACATGaaggtttttgagaaaatgtattgaaaaatatagttATC
ATTATTCTTCGTTGTCCTCCAACTTTCGTTTCTTTTGAAGGACATAAAGA
GATTGCAGTACTTCATTTCGCCCATTGATATGATTCGTCAAAATACTTCC
AATTCGTTTTTCCACCCCTTTCATTGCAGCATGTCTCCTGTAAGAGGCGT
TAAATTCTCTGTGTAGACTTTCAATGCCTTGTTCCCCATAAATTCCACTT
CCTGTTTGCCAGCGACGAATAAATGGAACAGTGATCCTCCATCATGTGTA
GTTTTGGTGTAATTGAGCAAAGAGGGAATGTTTCCCAGATGTAGGTCATC
AACTTGGAGATGGATAATtctgaaatcaaaatattctaATATCAAACTAT
TGAGTATTTGAAAAGGTCTCCCCTTGGCGGGAACTGAGAATTTAAATTAT
CGAAAGAgttcaataataaatttttaattagCAGGAGTCTGCTGTGCCAA
TTTCACTGTACTAGTACTGTATCAATCACTCCAATCTCTCAAGATAATTT
TTATGTTAGTATTTTAAGATTCTCAAAACAAAGTAAATCAAGCCAATAAT
GgattaaaaatgaattttttttaaatatattctaATGATTCAGCTCACCA
AGTCTATGTATCCGAGattcttctttaaaaattgtCTTTCCGTTCATTTG
TAGATGACACACAGAGTATAACGAGAAGAGATGCTTAAATTTGGTGGCAA
TATCAATTGCTTTTTGATGAATGTTACATCTAACAAATCCCAAATTGTAA
ACGTACTTTGGAATCCGATTGCAAAGTTTCACTATGGACGTAGTCTGTAA
AGAGAAGgtaataatttttcattctATCATCTTTTGCAAGTCTGATTTTG
GAATGTTCTTGAGGGCTGAGTTGAATTTGATCAAATAACTAGACTGCATG
ATTTTTGTATACAAATTTCTTACCTTCAACATAGTATGGACATGGTTTCC
TACAAAGCTCTTCCCATGATAGTTCTGGCGACAAACGTTAAATGACTTGA
TGACATTATCCAACTCCTTTGATAGAGAACTTTTGCCTTATTCCGATTTA
GGGTACCAGCAATGTTGTTGTTCAACAGCTCATCTAATTCCTTTTGCTAT
AAATAATGGATAaggaaaaattaattcaaaataaatcGTGCCTTTGTAAT
TTAACTAAAGctttaagaaaatatatttacgcaagttttttgaatttttt
ttaccttttcctCCTTCTTGTTCCTGAAAAATTCTTCTCTGGGTGAGTAC
ACCTTTTTGATGcgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037857-exon-sc0001727-1491911889:40087..40381 | TCONS_00037857-exon-sc0001727-1491911889:40087..40381 | Clytia hemisphaerica | exon |
| TCONS_00037857-exon-sc0001727-1510915933:40087..40381 | TCONS_00037857-exon-sc0001727-1510915933:40087..40381 | Clytia hemisphaerica | exon |
| TCONS_00037857-exon-sc0001727-1575043694:40087..40381 | TCONS_00037857-exon-sc0001727-1575043694:40087..40381 | Clytia hemisphaerica | exon |
| TCONS_00037857-exon-sc0001727-1491911889:41190..41801 | TCONS_00037857-exon-sc0001727-1491911889:41190..41801 | Clytia hemisphaerica | exon |
| TCONS_00037857-exon-sc0001727-1510915933:41190..41801 | TCONS_00037857-exon-sc0001727-1510915933:41190..41801 | Clytia hemisphaerica | exon |
| TCONS_00037857-exon-sc0001727-1575043694:41190..41801 | TCONS_00037857-exon-sc0001727-1575043694:41190..41801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001727 | supercontig | sc0001727:40087..41801 + |
Blast
The following BLAST results are available for this feature:
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