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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037833 ID=TCONS_00037833|Name=TCONS_00037833|organism=Clytia hemisphaerica|type=transcript|length=1306bp
ATTCGAATAAGTTTTCATCAAATGGTTCTTGGATGGATAACGAAGACAAG
TCTGGAGTGTTGATAGAGACGTCATTTGGATCTTCATTAGGGTTAAGAAG
GATATTTGGTGCCACAGCATCTCTTTTCAACTCTCTACCATCtccataaa
atattttcataaccTGGATGTTATGATAATTGCGAAGAAAGTGGGAATCC
TTTTTCGGTAAACCTGTCTTCTCAGCaagattacatgtttttttgcaGCT
CCCTCTAATGAAATCTGGACATGCATGGAAATACCCACAAGATGGTTTGG
TGCAGCATCCGTCGTTTATAAACTCTCtgcaaatttttggaaatgagGAG
CgtaaaactttcattttcataataTCATCATAACCATTTGGAAAGACTTT
TTTCAGGATGTTTGAATTGTGAAGTATGTTGATACGATGCTCGAAGGGGC
ATGCGTTAGCATCAGGACATGACTTTTCTGACCATAAGAACTTCTTACAA
AGGTGTAGTTTTTGGCAATCTCTATCCTCGCAGTTTATGCTTTTATTGTA
TTGTTCACAAAGACCAACAGGAACTTTCACGTGAACCTCATAATTGACAT
CAGAAATCTGTCTCAGCCAAAACATTTTGTTATCAGCTTTGAGGGTTTGC
AGTAAATTCTGAGCTTTAGGAAACTGTTTAGCTAAACATTTAAGTTCAGC
CTTTACATGAATGCCATTTCTNCGAAATCTGTCTCAGCCAAAACAATTTA
TTATCAGCTTTGAGGGTTTGCAGTAAATTCTGAGCTTTAGGAAACTGTTT
AGCTAAACATTTAAGTTCAGCTTTTACATGAATGCCATTTCTTCTAGCAA
TCCATTTGTGGATCTGAGTGGTAAAATCCTGataacCTTTAGAAGTAGTA
TTCATTGAGCCGGAGGTGCTGTAATCAGAGACAGATAACGTTGATAAATC
TGATATACTGCTGGAAACACTTTCACAATCATTTTCTTTGTCATCTTTTG
GTAATAAGAGATTGTGGAGTAATTCACCTTTGTTGGATAGGCATTTGGCA
TCATAACCGAAATTTAGAAGCACTTTTCTATTATGGGCTCTACCAAAGTC
ATGAACGATGGCTTTCTTTTGGTCACTTTTCTCAGCAAGTTGGCATATTC
CTgtacattttccttttaaatAGTCCAAACAAATATGCAAATATCCACAG
TATATTTTGTCACATTGCCCAGTGTCTTGAAACATTTTGCAAAGTCTCAA
CAAGGAAGATCTTAAAAGAACAGGAATAGATTTCACAAAGTTTGATGTTG
AGACCG Run BLAST on NCBI transcript from alignment at sc0001724:11100..13939+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037833 ID=TCONS_00037833|Name=TCONS_00037833|organism=Clytia hemisphaerica|type=transcript|length=2840bp|location=Sequence derived from alignment at sc0001724:11100..13939+ (Clytia hemisphaerica)
ATTCGAATAAGTTTTCATCAAATGGTTCTTGGATGGATAACGAAGACAAG
TCTGGAGTGTTGATAGAGACGTCATTTGGATCTTCATTAGGGTTAAGAAG
GATATTTGGTGCCACAGCATCTCTTTTCAACTCTCTACCATCtccataaa
atattttcataaccTGGATGTTATGATAATTGCGAAGAAAGTGGGAATCC
TTTTTCGGTAAACCTGTCTTCTCAGCaagattacatgtttttttgcaGCT
CCCTCTAATGAAATCTGGACATGCATGGAAATACCCACAAGATGGTTTGG
TGCAGCATCCGTCGTTTATAAACTCTCtgcaaatttttggaaatgagGAG
CgtaaaactttcattttcataataTCATCATAACCATTTGGAAAGACTTT
TTTCAGGATGTTTGAATTGTGAAGTATGTTGATACGATGCTCGAAGGGGC
ATGCGTTAGCATCAGGACATGACTTTTCTGACCATAAGAACTTCTTACAA
AGGTGTAGTTTTTGGCAATCTCTATCCTCGCAGTTTATGCTTTTATTGTA
TTGTTCACAAAGACCAACAGGAACTTTCACGTGAACCTCATAATTGACAT
CAGAAATCTGTCTCAGCCAAAACATTTTGTTATCAGCTTTGAGGGTTTGC
AGTAAATTCTGAGCTTTAGGAAACTGTTTAGCTAAACATTTAAGTTCAGC
CTTTACATGAATGCCATTTCTNCGAAATCTGTCTCAGCCAAAACAATTTA
TTATCAGCTTTGAGGGTTTGCAGTAAATTCTGAGCTTTAGGAAACTGTTT
AGCTAAACATTTAAGTTCAGCTTTTACATGAATGCCATTTCTTCTAGCAA
TCCATTTGTGGATCTGAGTGGTAAAATCCTGGtctaaaaacaatgaaata
ataaTGTTCTATCATACAAGCAATGATTATCAATCAGTAATCTAGTATGA
GATGAAAATATAACTGTAATATATGACCtgattttcagaagaaaaaattc
ATGCTTGAATAAGTTGAAGAATCAAATTCAGAAATTGgaatttttgataa
atgcacaaaatcaaagtaaatcCAGCAATAATTACTAATTTTCAGgccga
aaatatttttgctctaaaacagttgaaaatttaagaaaaatgaactgtaa
gagtatgaatttcaccaattttttcaCTGTAAGAGTTTGCACCCTTAGCA
GCAAAAGCAGAAtggatgaaaaatataaaagataacCTTTAGAAGTAGTA
TTCATTGATCCAGAGGTGCTGTAATCAGAGACAGATAACGTTGATAAATC
TGATATACTGCTGGAAACACTTTCACAATCATTTTCTTTGTCATCTTTTG
GTAATAAGAGATTGTGGAGTAATTCACCTTTGTTGGATAGGCATTTGGCA
TCATAACCGAAATTTAGAAGCACTTTTCTATTATGGGCTCTACCAAAGTC
ATGAACGATGGCTTTCTTTTGGTCACTTTTCTCAGCAAGTTGGCATATTC
CTgtacattttccttttaaatAGTCCAAACAAATATGCAAATATCCACAG
TATATTTTGTCACATTGCCCAGTGTCTTGAAACATTTTGCAAAGTCTCAA
CAAGGAAGATCTTAAAAGAACAGGAATAGATTTCACAAAGTTTGATGTTG
AGACCGGAAGGGCATTATGAATAATATCTTTGTTGTGTTTATCATCGAAA
TTGTGTGATAAACTGTCTCTACAAGGTCCTTTACAAAATTTAGGTGATAA
CAGATTCAATGGACATAAGTGAAGCTTGTTGCAATGGCCAGGGCAGGATC
CTTTTGCTGCTTGATACTGAGTGCAAAGCCGAATCGACAGCTTTGGTCTA
ACTTCAAGGTCACTGTTAGTATGGCCTGTCCAAAAAAGGGCTTTGCATTG
TTCAATTTCATATTGCAAGTTCTTAATATGTGGAAAAGTTTCTTCAAGTT
CTGTGATATTAGAACAGCTTCTTCCATCTTTGTTGACTAGCCAACGGAAC
ACAGAAATAAGAtctaagaagaaaaaatcaaataatattttaaatataaa
aataagtaCTGGAATGAGGAtgaagacaaaaataccatttagaatgtaaa
aattttcttatactAGATAGAAATTATGTTAAATGATGAGTTTTTTTTGT
CACTTAGATTCCCTGAAATAAAACTACTTTTTTAGCCATATTGAGTGTAT
CACTACTTACAATTGTCATAGGCTTCCATGCTCACTTATTGATCATGTCG
ATACCAAAATAGTCATTTCTTGcattctaaaaaataataaaccagccgag
gctggaaggNTGTAAAGGTGCGATTcttaaagccaattttttttccatat
aTACTGGTGAAACCACTGCCCCCCTCGAGAAACAGCAACAAGAGAAagga
tgaaaaatataaaagataacCTTTAGAAGTAGTATTCATTGAGCCGGAGG
TGCTGTAATCAGAGACAGATAACGTTGATAAATCTGATATACTGCTGGAA
ACACTTTCACAATCATTTTCTTTGTCATCTTTTGGTAATAAGAGATTGTG
GAGTAATTCACCTTTGTTGGATAGGCATTTGGCATCATAACCGAAATTTA
GAAGCACTTTTCTATTATGGGCTCTACCAAAGTCATGAACGATGGCTTTC
TTTTGGTCACTTTTCTCAGCAAGTTGGCATATTCCTgtacattttccttt
taaatAGTCCAAACAAATATGCAAATATCCACAGTATATTTTGTCACATT
GCCCAGTGTCTTGAAACATTTTGCAAAGTCTCAACAAGGAAGATCTTAAA
AGAACAGGAATAGATTTCACAAAGTTTGATGTTGAGACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037833-exon-sc0001724-1491911889:11100..11980 | TCONS_00037833-exon-sc0001724-1491911889:11100..11980 | Clytia hemisphaerica | exon |
| TCONS_00037833-exon-sc0001724-1510915933:11100..11980 | TCONS_00037833-exon-sc0001724-1510915933:11100..11980 | Clytia hemisphaerica | exon |
| TCONS_00037833-exon-sc0001724-1575043694:11100..11980 | TCONS_00037833-exon-sc0001724-1575043694:11100..11980 | Clytia hemisphaerica | exon |
| TCONS_00037833-exon-sc0001724-1491911889:13515..13939 | TCONS_00037833-exon-sc0001724-1491911889:13515..13939 | Clytia hemisphaerica | exon |
| TCONS_00037833-exon-sc0001724-1510915933:13515..13939 | TCONS_00037833-exon-sc0001724-1510915933:13515..13939 | Clytia hemisphaerica | exon |
| TCONS_00037833-exon-sc0001724-1575043694:13515..13939 | TCONS_00037833-exon-sc0001724-1575043694:13515..13939 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001724 | supercontig | sc0001724:11100..13939 + |
Blast
The following BLAST results are available for this feature:
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