TCONS_00037814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037814
Unique NameTCONS_00037814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037814 ID=TCONS_00037814|Name=TCONS_00037814|organism=Clytia hemisphaerica|type=transcript|length=405bp
cccctcacccattcaaaattggaaaattggtttcCCCCTATGAAAAACAC
CTCTATTTGAAAAACAAGtagataaaatattattaccGAGTCCTTGAGCT
TGAGAAACTGTAACCTAGCAGCAGAAATTGCGTTAAAAGAGTTGCGCTAT
GCCAAATTAATTCtgaaaagaaatcttttcaaCCTCTGATTTTCCCCAAA
TTCGCTtaaatcgaaacaaaaatatcttcaaatgtATAAAATCTCCATTT
TCATTATATCCCTCAACTACAAAACAGTAGTACGGGTATGTAACAGTTGT
AAGAAGGAGGTAAAATTGTTATTTTGCCTCTAACCTGGCTCATACCGAAA
TCAGTTTGTatagttttttttattctcGAACGTCTATATGAATCGAAAAC
GCCTG
Run BLAST on NCBI

transcript from alignment at sc0001717:43170..43574

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037814 ID=TCONS_00037814|Name=TCONS_00037814|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at sc0001717:43170..43574 (Clytia hemisphaerica)
CAGGCGTTTTCGATTCATATAGACGTTCgagaataaaaaaaactatACAA
ACTGATTTCGGTATGAGCCAGGTTAGAGGCAAAATAACAATTTTACCTCC
TTCTTACAACTGTTACATACCCGTACTACTGTTTTGTAGTTGAGGGATAT
AATGAAAATGGAGATTTTATacatttgaagatatttttgtttcgatttaA
GCGAATTTGGGGAAAATCAGAGGttgaaaagatttcttttcaGAATTAAT
TTGGCATAGCGCAACTCTTTTAACGCAATTTCTGCTGCTAGGTTACAGTT
TCTCAAGCTCAAGGACTCggtaataatattttatctaCTTGTTTTTCAAA
TAGAGGTGTTTTTCATAGGGGgaaaccaattttccaattttgaatgggtg
agggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022534XLOC_022534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037814-exon-sc0001717-1491911889:43170..43574TCONS_00037814-exon-sc0001717-1491911889:43170..43574Clytia hemisphaericaexon
TCONS_00037814-exon-sc0001717-1510915933:43170..43574TCONS_00037814-exon-sc0001717-1510915933:43170..43574Clytia hemisphaericaexon
TCONS_00037814-exon-sc0001717-1575043694:43170..43574TCONS_00037814-exon-sc0001717-1575043694:43170..43574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001717supercontigsc0001717:43170..43574 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.543027	1.05907	1.84453	2.40611	0.244101	0.192892	1.39629	1.74292	0.457598	1.32255	1.46709	0.120551	0.842683	0.500077	0.411131	0.441207	0.135883	0.696377	0	0.60405	0.875048	1.02436	0.207541	0.943426	0.971706	0.34689	0.248199	1.05954	0.401812	0.204691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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