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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037794 ID=TCONS_00037794|Name=TCONS_00037794|organism=Clytia hemisphaerica|type=transcript|length=569bp
AAGAGACCATGTGCAACTGTTCTGCCTTCGATCCAAGATACAGgccTTGG
TACCCGAACCTTGtgaatacaaaagaaggaaAAGAATTTGTGATCGTCCT
CGATTATTCATCCAAAATGAAAGGAGATCTTTTGAAGCAAGCCAAAAAAG
TTGTTCACAACTTACTACGAATCATAGATGGGAAAGACAAGATAGTACTA
CGAATTATATCAGGAGGGAACTCTATCGCACCATCAGAGTTTGATTGCTT
GAAGTTTCTAACCGAAGCTCGCCCTTCGGTCATCAAAGTACTGAAAGATT
TCTTGGACAGAACAGGTCAAACTGGACTTCTTGAGTACGCTAAAGTCTTC
CGTGACTCGTTCAGATTGTTTGGTTCAAGCAATAAAAAGAAGCTGTTCAT
CCTAATCACATCAGGGGAGCACGATGAAAGTTATTCCCAAGTCAAAGAAT
ATTACAAAAACGGTTATCAANGAGCACGATGAAAGTTATTCCCAAGTCAA
AGAATATTACAAAAACGGTTATCAAAAAGCTTGTCAAGCTTCTGTTGTCA
TCTTTCTCGTGCAAGGTAC Run BLAST on NCBI protein sequence of TCONS_00037794-protein >TCONS_00037794-protein ID=TCONS_00037794-protein|Name=TCONS_00037794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
ETMCNCSAFDPRYRPWYPNLVNTKEGKEFVIVLDYSSKMKGDLLKQAKKV
VHNLLRIIDGKDKIVLRIISGGNSIAPSEFDCLKFLTEARPSVIKVLKDF
LDRTGQTGLLEYAKVFRDSFRLFGSSNKKKLFILITSGEHDESYSQVKEY
YKNGYQXAR Run BLAST on NCBI transcript from alignment at sc0001714:12435..14298+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037794 ID=TCONS_00037794|Name=TCONS_00037794|organism=Clytia hemisphaerica|type=transcript|length=1864bp|location=Sequence derived from alignment at sc0001714:12435..14298+ (Clytia hemisphaerica)
AAGAGACCATGTGCAACTGTTCTGCCTTCGATCCAAGATACAGGTATTTT
TCAATGTATTTTGCCTTTCCAAATGAATTTTACAACTGACTTTGTCACAG
GGGTGTGTTTTGTGCCTCAATATAAGCCTTCGTttgcttggaaaggcttg
agaGTAAATCTTTTTTGCGGACTTATTAAGTACTACTTCTGAATTTGtct
aaaaagtacttttaagagcatcttaggaggGTAATATTTTCTATACCATA
TGATCTTAGTGTTTAGTGTGAGCTACTTGCTATGTAAAGTTGATACACGC
CACGGGTTACACGGTTTGCAAGATGACAGTGTTTTTATGATTCGAAAACT
TTCACAGAGTGGGTTAGTTTTTGTAAAAACTACTATTACTGTTCGCACGT
ACCATAGTCCGTATagaaaacactggtctggaagccttttgtttcttact
tgaacttgctttgagaaatgtttgtttTCCTCTCTTTTTGATCGTGTGAT
TAAGTCAATTCCAAGAAGActaaaactgagcaaatcgatttttatcttta
tatATCAGCAAAGGAAAAAGGTAACAATAAGTTTCCAGACTAGGGTTTAT
TTAACGGACTATGCACATACCCAGGTACATATTTAACCTAAGTATCCACC
AAGACTTAGTTTGATGGTTGGTTtgaatgatttttgattttttcaattga
aacattttcttcttttttgaaggccTTGGTACCCGAACCTTGtgaataca
aaagaaggaaAAGAATTTGTGATCGTCCTCGATTATTCATCCAAAATGAA
AGGAGATCTTTTGAAGCAAGCCAAAAAAGTTGTTCACAACTTACTACGAA
TCATAGATGGGAAAGACAAGGtttgatttgttttcatttctcTCAAAACT
ATGTGCTAGATCTGTAAATGTGACCTAGACCTATGTTTGATCCTCTGTGG
TGGATCTGAGGAGAGCTCAAAACTTATGATGGAGAGTCTCCATTACCTTA
TAAGGATCATGGCTTTAAAAAACACTCTTCGTTATAAATTTTGAGCCCTC
TTAAATCCGCAACAACTTGTATCCTCTACGTTCTTTTTCAATAGTTTAAG
ATCCTAGCAAAATAGTTTAAGATCCTCGCAAAATAGTTAAAGATCCTCGC
AAAATGTCATAATATTGTATAAAGGATAAGTGGGCTACAGTTTCTCTCAT
AAACgctaaaacaaagaaatttgtaCCTTTTTTAGATAGTACTACGAATT
ATATCAGGAGGGAACTCTATCGCACCATCAGAGTTTGATTGCTTGAAGTT
TCTAACCGAAGCTCGCCCTTCGGTCATCAAAGTACTGAAAGATTTCTTGG
ACAGAACAGGTCAAACTGGACTTCTTGAGTACGCTAAAGTCTTCCGTGAC
TCGTTCAGATTGTTTGGTTCAAGCAATAAAAGTAAGCTGAACTAGTTAAT
GGTTTCGCATGGCGTATTTATTTCGCCACTTTTTCAATTGCAAATCCTTC
CTCAAGTTCATGTATCAAAAACAGTTGAAATGGCgagacaaaaaagaaaa
ctatCACGAACACTGAAGGGTCGGATAAATTTTGAGACCAGTTCAGATTT
TCAGCGGGGGGGGCGCTTACAACACATCTGTTTGCAAATCATATGAAAAC
GTAAAAAGTAATGGTGATATCATTCTTTTCAGAGAAGCTGTTCATCCTAA
TCACATCAGGGGAGCACGATGAAAGTTATTCCCAAGTCAAAGAATATTAC
AAAAACGGTTATCAANGAGCACGATGAAAGTTATTCCCAAGTCAAAGAAT
ATTACAAAAACGGTTATCAAAAAGCTTGTCAAGCTTCTGTTGTCATCTTT
CTCGTGCAAGGTAC Coding sequence (CDS) from alignment at sc0001714:12435..14298+ >TCONS_00037794 ID=TCONS_00037794|Name=TCONS_00037794|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0001714:12435..14298+ (Clytia hemisphaerica)
GAGACCATGTGCAACTGTTCTGCCTTCGATCCAAGATACAGgccTTGGTA
CCCGAACCTTGtgaatacaaaagaaggaaAAGAATTTGTGATCGTCCTCG
ATTATTCATCCAAAATGAAAGGAGATCTTTTGAAGCAAGCCAAAAAAGTT
GTTCACAACTTACTACGAATCATAGATGGGAAAGACAAGATAGTACTACG
AATTATATCAGGAGGGAACTCTATCGCACCATCAGAGTTTGATTGCTTGA
AGTTTCTAACCGAAGCTCGCCCTTCGGTCATCAAAGTACTGAAAGATTTC
TTGGACAGAACAGGTCAAACTGGACTTCTTGAGTACGCTAAAGTCTTCCG
TGACTCGTTCAGATTGTTTGGTTCAAGCAATAAAAAGAAGCTGTTCATCC
TAATCACATCAGGGGAGCACGATGAAAGTTATTCCCAAGTCAAAGAATAT
TACAAAAACGGTTATCAANGAGCACGATGAGAGACCATGTGCAACTGTTC
TGCCTTCGATCCAAGATACAGgccTTGGTACCCGAACCTTGtgaatacaa
aagaaggaaAAGAATTTGTGATCGTCCTCGATTATTCATCCAAAATGAAA
GGAGATCTTTTGAAGCAAGCCAAAAAAGTTGTTCACAACTTACTACGAAT
CATAGATGGGAAAGACAAGATAGTACTACGAATTATATCAGGAGGGAACT
CTATCGCACCATCAGAGTTTGATTGCTTGAAGTTTCTAACCGAAGCTCGC
CCTTCGGTCATCAAAGTACTGAAAGATTTCTTGGACAGAACAGGTCAAAC
TGGACTTCTTGAGTACGCTAAAGTCTTCCGTGACTCGTTCAGATTGTTTG
GTTCAAGCAATAAAAAGAAGCTGTTCATCCTAATCACATCAGGGGAGCAC
GATGAAAGTTATTCCCAAGTCAAAGAATATTACAAAAACGGTTATCAANG
AGCACGATGAGAGACCATGTGCAACTGTTCTGCCTTCGATCCAAGATACA
GgccTTGGTACCCGAACCTTGtgaatacaaaagaaggaaAAGAATTTGTG
ATCGTCCTCGATTATTCATCCAAAATGAAAGGAGATCTTTTGAAGCAAGC
CAAAAAAGTTGTTCACAACTTACTACGAATCATAGATGGGAAAGACAAGA
TAGTACTACGAATTATATCAGGAGGGAACTCTATCGCACCATCAGAGTTT
GATTGCTTGAAGTTTCTAACCGAAGCTCGCCCTTCGGTCATCAAAGTACT
GAAAGATTTCTTGGACAGAACAGGTCAAACTGGACTTCTTGAGTACGCTA
AAGTCTTCCGTGACTCGTTCAGATTGTTTGGTTCAAGCAATAAAAAGAAG
CTGTTCATCCTAATCACATCAGGGGAGCACGATGAAAGTTATTCCCAAGT
CAAAGAATATTACAAAAACGGTTATCAANGAGCACGATGAGAGACCATGT
GCAACTGTTCTGCCTTCGATCCAAGATACAGgccTTGGTACCCGAACCTT
GtgaatacaaaagaaggaaAAGAATTTGTGATCGTCCTCGATTATTCATC
CAAAATGAAAGGAGATCTTTTGAAGCAAGCCAAAAAAGTTGTTCACAACT
TACTACGAATCATAGATGGGAAAGACAAGATAGTACTACGAATTATATCA
GGAGGGAACTCTATCGCACCATCAGAGTTTGATTGCTTGAAGTTTCTAAC
CGAAGCTCGCCCTTCGGTCATCAAAGTACTGAAAGATTTCTTGGACAGAA
CAGGTCAAACTGGACTTCTTGAGTACGCTAAAGTCTTCCGTGACTCGTTC
AGATTGTTTGGTTCAAGCAATAAAAAGAAGCTGTTCATCCTAATCACATC
AGGGGAGCACGATGAAAGTTATTCCCAAGTCAAAGAATATTACAAAAACG
GTTATCAANGAGCACGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037794-exon-sc0001714-1491911889:12435..12477 | TCONS_00037794-exon-sc0001714-1491911889:12435..12477 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1510915933:12435..12477 | TCONS_00037794-exon-sc0001714-1510915933:12435..12477 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1575043694:12435..12477 | TCONS_00037794-exon-sc0001714-1575043694:12435..12477 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1491911889:13157..13304 | TCONS_00037794-exon-sc0001714-1491911889:13157..13304 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1510915933:13157..13304 | TCONS_00037794-exon-sc0001714-1510915933:13157..13304 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1575043694:13157..13304 | TCONS_00037794-exon-sc0001714-1575043694:13157..13304 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1491911889:13670..13865 | TCONS_00037794-exon-sc0001714-1491911889:13670..13865 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1510915933:13670..13865 | TCONS_00037794-exon-sc0001714-1510915933:13670..13865 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1575043694:13670..13865 | TCONS_00037794-exon-sc0001714-1575043694:13670..13865 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1491911889:14117..14298 | TCONS_00037794-exon-sc0001714-1491911889:14117..14298 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1510915933:14117..14298 | TCONS_00037794-exon-sc0001714-1510915933:14117..14298 | Clytia hemisphaerica | exon |
| TCONS_00037794-exon-sc0001714-1575043694:14117..14298 | TCONS_00037794-exon-sc0001714-1575043694:14117..14298 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001714 | supercontig | sc0001714:12435..14298 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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