TCONS_00037793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037793
Unique NameTCONS_00037793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037793 ID=TCONS_00037793|Name=TCONS_00037793|organism=Clytia hemisphaerica|type=transcript|length=533bp
ACTATAACATTACAAGACATTAGTTAAAATATATATTCCTTGTAAAGAAA
ATAAGTGATAATTTATAGCAAGATGGAGTTTACATTGTTTCTGGTTAACA
TTTTGTTTGTTATGGCAATTCATGAAACAGAAGGGACAGTCACTTCAACC
TTAGAAGACCAAGTGACTGACATGTCAAAAGCTTTGAATGATTTTGTAAA
CACAAACTTGGGCGTTGATCAACTACAGgacCATTTGAGCAAAATtacca
gcaaaaaaaaaacacaagaaGGATCTGAAATTCTCAGAAAGTTTCACGAC
AGCTTGGAAGAGAAAGTGAGGAAAGCCAACCAAACGTTAGAAGAGCTTAT
TGACGTCATCAAGAATGATTTCAAGGGGCCTGGCGACGGGGATGATAAAC
CAATCACGAGCTGTTGTGATTATGATGCCAGGAAAACTACCTACAGTAAC
CTGTTTAAAAACTGGgtaaattttgatgacgtttgCGGTTATGCGAGTGT
TGATCACAATTTATGTCCCAATCAATTGCGAAC
Run BLAST on NCBI

protein sequence of TCONS_00037793-protein

>TCONS_00037793-protein ID=TCONS_00037793-protein|Name=TCONS_00037793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MEFTLFLVNILFVMAIHETEGTVTSTLEDQVTDMSKALNDFVNTNLGVDQ
LQDHLSKITSKKKTQEGSEILRKFHDSLEEKVRKANQTLEELIDVIKNDF
KGPGDGDDKPITSCCDYDARKTTYSNLFKNWVNFDDVCGYASVDHNLCPN
QLR
Run BLAST on NCBI

transcript from alignment at sc0001714:9430..12279+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037793 ID=TCONS_00037793|Name=TCONS_00037793|organism=Clytia hemisphaerica|type=transcript|length=2850bp|location=Sequence derived from alignment at sc0001714:9430..12279+ (Clytia hemisphaerica)
ACTATAACATTACAAGACATTAGTTAAAATATATATTCCTTGTAAAGAAA
ATAAGTGATAATTTATAGCAAGATGGAGTTTACATTGTTTCTGGTTAACA
TTTTGTTTGTTATGGCAATTCATGAAACAGAAGGGACAGTCACTTCAACC
TTAGAAGACCAAGTGACTGACATGTCAAAAGCTTTGAATGATTTTGTAAA
CACAAACTTGGGCGTTGATCAACTACAGGTACAGTGTAAGTTAGAATAGg
ctatttcacagtcgaaatggataatgggtaatcaggactgactgcgcctc
cattacggctttctgttggctagacgcaataatcttcaaaaaatttcaaa
gctctggtccaatagtaagtcgtcattagcgcgcagtggtcctgattacc
cattacgctttgcgactgtgaaatggcctattagAGTATTAAATGGAGAA
agtgacatcttgacatttcaGAAGAGTGCTTCGTTAGATATTcaattcat
agaattatattgcAGACTGAGAATAAATGGTTTGGATGTGTGTTGATGTG
taacaataaaaaagtattttgaatatttttaccaTTCGAATTTGtttata
cagtagagtctctacAACTCGAAATGTTTTCAACTCGAACAAATTAATGT
TCCCCGTgctggttcgaattatagagactcCACCCACTGTATAGGTTTCA
CAACGcagatattttcaattttcaggacCATTTGAGCAAAATtaccagca
aaaaaaaaacacaagaaGGATCTGAAATTCTCAGAAAGGTGAGTTACTTT
TCATGCTATAACAAGCTCAGCTCATAAAACTTTGTTAGGAGGAAGAAGAC
CACAAAATATTAATCAAACTAATCCTCGACTGGCCCAATAATGTCGATGT
ACATCTTAAAAGAACTTCCAACGCTACTCCAATTATGGCAGAGGGAACAA
TGGCCAAACATTGAAACAATTAAAGAATGGATATTCTGGACCTGTGCtta
tttagcattttttaatAGAGAAAATTTAGTCATATCGAAGTTGCACAATT
TTTGGTAGTAACACTAACAATGAGTATATAGCTTGAAATCCTTCATGTTG
AAATATAATGTTTTCGAAACTAATCTATCTGAAACTCATTATCATGATAA
ATAGTTAATAACAAACGTTAATAGATGCATGTAATTAAAGGATGCAGTTA
ATTGTGAAAgatagaaaacatttttttgcacaGTGGTTTTCTAATGCAAT
AAACGATGTTCATTAGTTTCAGGAAGTATTAAAAACCCGTCAGGTATTTC
CCTTGCTTANAAACGATGTTCACTTAGTTTCAGGAAGTATTAAAAACCCG
TCAGGTATTTCCCTTGCTTATGATGTCCGTGATTTCTGGGAGAAAAATCC
TAAAACATAATTTCCCTTCTGAAATGATCAATGAATTTATCGCAAGTTAA
ATGACCTCTTAGAAATaacacaccccttctcacagaccgactgggaaccc
ttcccattGGAANTAAGAATGACCTCTTAGAAAtgatacaccccttctca
cacaATCACTGGGAATCGTCCCAttggaaaaattagccaaaaaacCCCTA
GTGGAAagttatactccaatttttatccccactgaaaataatcagacaaa
caaatcctcactgcaaaatattgtgctattttttccatccccattgaatt
ttctggcaagaaaacaatagaattcaaatccccagccgttaaaaacatag
gaatatcgatccccatcaagttttggtccgttatttttacccccctCTGC
CTGATAAAATCCAACCGGGtcttaggctgctggcatccactaacggattc
gtgctccttatatactacctagggttttgtagaggtctgcgattcagact
aaccaggtctgtgagaagggggtgaaATAGTACCAATTTCGTgacgtttc
attttcaaatataaaatttactcttttttataagaactgcaaGGTCCAAT
AAGGGGCAGCGGGCTTTTCCACTTGTAGTGGTCTGTATAATGCCCTATTA
GCTTAAAGAGTCTCTTCTGGAGAAAATATTTCTTGATCTTCTGATCCTCA
AAGTTTGCGAGATTTTCCGTTACCTTTTCCAATCGAGGTGCTATGTTTTC
ACATTACTTTTCCAGTTTCACGACAGCTTGGAAGAGAAAGTGAGGAAAGC
CAACCAAACGTTAGAAGAGCTTATTGACGTCATCAAGAATGATTTCAAGG
GGCCTGGCGACGGGGATGATAAACCAATCACGAGCTGTTGTGATTATGAT
GCCAGGAAAACTACCTACAGTAACCTGTTTAAAAACTGGGTGAGTATGCT
TGAAGTGTCTTTAGGCACGCTGGGCGGAGAAAATATTAACTTTGATTAAC
CAAGCAGGGGTTCTGCCTTATTTTNTCTGTTTAAGAACTGGGTGGGTTTA
GCGCCCGTATGCTTGAAGTGTCTTTACGCACGCTGGGTGGAGAAAATATT
AACTTTGATTAACCAAGCAGGGGTTCTGCCTTATTTTTGATAGGCTTGCG
AATGAAAAATCCGGCGAATTCTAAATTCTAGGCCGGTGAATTCTTAGCAA
ACCCATGTACATGAATTATTAGACCAgtgaattgtaattttttttcgtac
CTTGGACCAGCGAAACTCGCCATTCGACGGACCTAAACAAGACCCCTAAC
CAAGGGCTCGAATTTATTCTAGAAAACGATATCATTTGACAAAATACACT
GACAAAATCTTGCACCCCTTTTTCACTAAAAggtaaattttgatgacgtt
tgCGGTTATGCGAGTGTTGATCACAATTTATGTCCCAATCAATTGCGAAC

Coding sequence (CDS) from alignment at sc0001714:9430..12279+

>TCONS_00037793 ID=TCONS_00037793|Name=TCONS_00037793|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0001714:9430..12279+ (Clytia hemisphaerica)
ATGGAGTTTACATTGTTTCTGGTTAACATTTTGTTTGTTATGGCAATTCA
TGAAACAGAAGGGACAGTCACTTCAACCTTAGAAGACCAAGTGACTGACA
TGTCAAAAGCTTTGAATGATTTTGTAAACACAAACTTGGGCGTTGATCAA
CTACAGgacCATTTGAGCAAAATtaccagcaaaaaaaaaacacaagaaGG
ATCTGAAATTCTCAGAAAGTTTCACGACAGCTTGGAAGAGAAAGTGAGGA
AAGCCAACCAAACGTTAGAAGAGCTTATTGACGTCATCAAGAATGATTTC
AAGGGGCCTGGCGACGGGGATGATAAACCAATCACGAGCTGTTGTGATTA
TGATGCCAGGAAAACTACCTACAGTAACCTGTTTAAAAACTGGgtaaatt
ttgatgacgtttgCGGTTATGCGAGTGTTGATCACAATTTATGTCCCAAT
CAATTGCGAATGGAGTTTACATTGTTTCTGGTTAACATTTTGTTTGTTAT
GGCAATTCATGAAACAGAAGGGACAGTCACTTCAACCTTAGAAGACCAAG
TGACTGACATGTCAAAAGCTTTGAATGATTTTGTAAACACAAACTTGGGC
GTTGATCAACTACAGgacCATTTGAGCAAAATtaccagcaaaaaaaaaac
acaagaaGGATCTGAAATTCTCAGAAAGTTTCACGACAGCTTGGAAGAGA
AAGTGAGGAAAGCCAACCAAACGTTAGAAGAGCTTATTGACGTCATCAAG
AATGATTTCAAGGGGCCTGGCGACGGGGATGATAAACCAATCACGAGCTG
TTGTGATTATGATGCCAGGAAAACTACCTACAGTAACCTGTTTAAAAACT
GGgtaaattttgatgacgtttgCGGTTATGCGAGTGTTGATCACAATTTA
TGTCCCAATCAATTGCGAATGGAGTTTACATTGTTTCTGGTTAACATTTT
GTTTGTTATGGCAATTCATGAAACAGAAGGGACAGTCACTTCAACCTTAG
AAGACCAAGTGACTGACATGTCAAAAGCTTTGAATGATTTTGTAAACACA
AACTTGGGCGTTGATCAACTACAGgacCATTTGAGCAAAATtaccagcaa
aaaaaaaacacaagaaGGATCTGAAATTCTCAGAAAGTTTCACGACAGCT
TGGAAGAGAAAGTGAGGAAAGCCAACCAAACGTTAGAAGAGCTTATTGAC
GTCATCAAGAATGATTTCAAGGGGCCTGGCGACGGGGATGATAAACCAAT
CACGAGCTGTTGTGATTATGATGCCAGGAAAACTACCTACAGTAACCTGT
TTAAAAACTGGgtaaattttgatgacgtttgCGGTTATGCGAGTGTTGAT
CACAATTTATGTCCCAATCAATTGCGAATGGAGTTTACATTGTTTCTGGT
TAACATTTTGTTTGTTATGGCAATTCATGAAACAGAAGGGACAGTCACTT
CAACCTTAGAAGACCAAGTGACTGACATGTCAAAAGCTTTGAATGATTTT
GTAAACACAAACTTGGGCGTTGATCAACTACAGgacCATTTGAGCAAAAT
taccagcaaaaaaaaaacacaagaaGGATCTGAAATTCTCAGAAAGTTTC
ACGACAGCTTGGAAGAGAAAGTGAGGAAAGCCAACCAAACGTTAGAAGAG
CTTATTGACGTCATCAAGAATGATTTCAAGGGGCCTGGCGACGGGGATGA
TAAACCAATCACGAGCTGTTGTGATTATGATGCCAGGAAAACTACCTACA
GTAACCTGTTTAAAAACTGGgtaaattttgatgacgtttgCGGTTATGCG
AGTGTTGATCACAATTTATGTCCCAATCAATTGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022516XLOC_022516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037793-exon-sc0001714-1491911889:9430..9657TCONS_00037793-exon-sc0001714-1491911889:9430..9657Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1510915933:9430..9657TCONS_00037793-exon-sc0001714-1510915933:9430..9657Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1575043694:9430..9657TCONS_00037793-exon-sc0001714-1575043694:9430..9657Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1491911889:10155..10217TCONS_00037793-exon-sc0001714-1491911889:10155..10217Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1510915933:10155..10217TCONS_00037793-exon-sc0001714-1510915933:10155..10217Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1575043694:10155..10217TCONS_00037793-exon-sc0001714-1575043694:10155..10217Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1491911889:11595..11768TCONS_00037793-exon-sc0001714-1491911889:11595..11768Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1510915933:11595..11768TCONS_00037793-exon-sc0001714-1510915933:11595..11768Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1575043694:11595..11768TCONS_00037793-exon-sc0001714-1575043694:11595..11768Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1491911889:12212..12279TCONS_00037793-exon-sc0001714-1491911889:12212..12279Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1510915933:12212..12279TCONS_00037793-exon-sc0001714-1510915933:12212..12279Clytia hemisphaericaexon
TCONS_00037793-exon-sc0001714-1575043694:12212..12279TCONS_00037793-exon-sc0001714-1575043694:12212..12279Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037793-proteinTCONS_00037793-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001714supercontigsc0001714:9430..12279 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0502477	0	2.49182	1.00336	5.03266	5.6366	2.58235	5.37444	3.44882	2.12919	14.4289	12.3128	1.11123	3.16442	1.30754	5.98503	4.93411	6.31955	5.31372	6.22311	1.76929	2.80321	12.458	10.3904	4.41573	3.58198	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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