TCONS_00037777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037777
Unique NameTCONS_00037777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037777 ID=TCONS_00037777|Name=TCONS_00037777|organism=Clytia hemisphaerica|type=transcript|length=480bp
TACTTATATTAGTCTAGGGAGAAGAGAGTAGCGTGACAGGAAGAAATAAG
TTCAATAATGAATGGAACTAAAACGAATTTCTTTGGTAATCGGGATGGGC
GACTACTCGAATATGACGGAAGGGAATACCTTATAGGAAAGATATTATCG
CAGAATTAAGAACAATATTTGCACTTAAATAGTATACTTTAGGTGttgtt
atttattttgatgTAGCAACACtagaaaaaattcgaaaataggTCCAGAA
CCCGTGATTAGGGATTTTCTTAATGATATTGTTAATCTTAATTAGAATTA
GCTAAAAAAAAGCCCGGATTCTGAAGTGAATATAATAGGGAGGTTTGAGT
ATTCGAGTATCACGATGACGAACAGGCTTTTCTTATTAAAGCCCCATCTA
CATCACACAAAAGAAAATAGGAGTAAACGAGACAATAATGTTGATGTTAT
AAAACAAGGTTAGTATTACGTCGGTATTAC
Run BLAST on NCBI

transcript from alignment at sc0001710:29490..29969

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037777 ID=TCONS_00037777|Name=TCONS_00037777|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at sc0001710:29490..29969 (Clytia hemisphaerica)
GTAATACCGACGTAATACTAACCTTGTTTTATAACATCAACATTATTGTC
TCGTTTACTCCTATTTTCTTTTGTGTGATGTAGATGGGGCTTTAATAAGA
AAAGCCTGTTCGTCATCGTGATACTCGAATACTCAAACCTCCCTATTATA
TTCACTTCAGAATCCGGGCTTTTTTTTAGCTAATTCTAATTAAGATTAAC
AATATCATTAAGAAAATCCCTAATCACGGGTTCTGGAcctattttcgaat
tttttctaGTGTTGCTAcatcaaaataaataacaaCACCTAAAGTATACT
ATTTAAGTGCAAATATTGTTCTTAATTCTGCGATAATATCTTTCCTATAA
GGTATTCCCTTCCGTCATATTCGAGTAGTCGCCCATCCCGATTACCAAAG
AAATTCGTTTTAGTTCCATTCATTATTGAACTTATTTCTTCCTGTCACGC
TACTCTCTTCTCCCTAGACTAATATAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022504XLOC_022504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037777-exon-sc0001710-1491911889:29490..29969TCONS_00037777-exon-sc0001710-1491911889:29490..29969Clytia hemisphaericaexon
TCONS_00037777-exon-sc0001710-1510915933:29490..29969TCONS_00037777-exon-sc0001710-1510915933:29490..29969Clytia hemisphaericaexon
TCONS_00037777-exon-sc0001710-1575043694:29490..29969TCONS_00037777-exon-sc0001710-1575043694:29490..29969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001710supercontigsc0001710:29490..29969 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.127662	0.296455	0.145018	0.70618	0.279017	1.17818	0.945423	0.772232	0.409943	0.530534	0.261564	0.522401	0.27126	0.371687	0.638203	0.786214	0.402922	0.139165	0	0.126575	0.555651	0.150104	0	0.702784	0.878105	0.179509	0	4.50444	4.73735
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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