TCONS_00037772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037772
Unique NameTCONS_00037772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037772 ID=TCONS_00037772|Name=TCONS_00037772|organism=Clytia hemisphaerica|type=transcript|length=407bp
GTCCAAATAAATTGTGTCGACATTAATACCTCTCTCAAGGTATGATAGTA
TTGTATCATAATGTTCAAGGAGTTGACTCAAACAAGATCTACCTTGTCGA
AAGCTtatactctaccatttttgttttgatttaactttgtattttagtGA
CCAGCCgtgtcattcatttgagggctatgcatttTAGCCTTCACCTCTCA
TGCAAGACTCATGCAAGTTTAACACGGATCGATCTCACGCACACCCACCA
CGTAGCTAAAACTATTAATGGAAAAACATGAATGACCATCTATCCACCTA
CCAGTGTACATCGTTTTCTTCAATCTCAGTCAATGGAtgtcagtttgttt
ttttatttttatccaaACTTTTCCCTTTTTTGCTCCATGTTGGATTTTTT
GCTGTGC
Run BLAST on NCBI

transcript from alignment at sc0001709:4619..5025

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037772 ID=TCONS_00037772|Name=TCONS_00037772|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0001709:4619..5025 (Clytia hemisphaerica)
GCACAGCAAAAAATCCAACATGGAGCAAAAAAGGGAAAAGTttggataaa
aataaaaaaacaaactgacaTCCATTGACTGAGATTGAAGAAAACGATGT
ACACTGGTAGGTGGATAGATGGTCATTCATGTTTTTCCATTAATAGTTTT
AGCTACGTGGTGGGTGTGCGTGAGATCGATCCGTGTTAAACTTGCATGAG
TCTTGCATGAGAGGTGAAGGCTAaaatgcatagccctcaaatgaatgaca
cGGCTGGTCactaaaatacaaagttaaatcaaaacaaaaatggtagagta
taAGCTTTCGACAAGGTAGATCTTGTTTGAGTCAACTCCTTGAACATTAT
GATACAATACTATCATACCTTGAGAGAGGTATTAATGTCGACACAATTTA
TTTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022499XLOC_022499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037772-exon-sc0001709-1491911889:4619..5025TCONS_00037772-exon-sc0001709-1491911889:4619..5025Clytia hemisphaericaexon
TCONS_00037772-exon-sc0001709-1510915933:4619..5025TCONS_00037772-exon-sc0001709-1510915933:4619..5025Clytia hemisphaericaexon
TCONS_00037772-exon-sc0001709-1575043694:4619..5025TCONS_00037772-exon-sc0001709-1575043694:4619..5025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001709supercontigsc0001709:4619..5025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.94352	0.223695	0.962691	1.09997	0	0.764255	0	0.590407	0.453456	3.08298	1.55999	0.614852	0.731037	0.616984	0.305271	0.216555	0	0.758479	1.34658	0.265783	1.1763	1.06717	0	0.260576	1.56538	0.736272	0	0.307922	0.615268	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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