TCONS_00037754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037754
Unique NameTCONS_00037754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037754 ID=TCONS_00037754|Name=TCONS_00037754|organism=Clytia hemisphaerica|type=transcript|length=768bp
ggatgcttttgttttaaaactgatAACTTCCTTTTGGGAAGTTGAGCTTT
TTTGAACGCCCAAATCTTAAAATTATCCTAAATTCGCTTTAAATCGCGCC
CTAAGACCAGAAATAACTTTAGAAATCATTAATTTGTTTTCGCTCACTTC
GCTCGCAGtagtttctttcaaatttttttgatctAGAGATAGTATCAAAT
TAATATCTTTATCCGTTACTTTCtactatttgaaattttatcacCAGATA
AGCTCCCATTTTCGATGAAAGTTCAAGATCCCTTGATGGTTTTTCCACTC
TCTTATTCATTTCTAGCATTTTACTAAagttttggtcaaatttaaggTCT
ATTctggaaaaaatttttgctCGCTTTGCTCAAGCAGAGTCAACCTTTTT
GCATTGACTTTTTGCATGTCGCCACCCcgccccccccaaaaaaaaaattg
accaaaaaggtcaaagttttccAAACAGAATGTGAAGGGGTCTGTAGTTT
TTGACGATTTTCTGGCTACCTTTGACCTTTTAAGGCCTTCTTTAAGCTGT
ATGACATTTCTTAGACCaaaattttcgcctgcggcACCAAGATTGCTAAG
AGAATTCTCTGCGACATGAAATTTTATGCTTTCTGCACTTTTTGTGACCA
TATTCTTGCTAACTTTGAGCTTGCAGCAAAAGTCTATGCATGCGGCGCAC
AAGTTACAATCAgagtcaaaatatattgagaattttggttatttcctcgt
ttttcgaatgAAGTTCAG
Run BLAST on NCBI

transcript from alignment at sc0001706:14091..14858

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037754 ID=TCONS_00037754|Name=TCONS_00037754|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at sc0001706:14091..14858 (Clytia hemisphaerica)
CTGAACTTcattcgaaaaacgaggaaataaccaaaattctcaatatattt
tgactcTGATTGTAACTTGTGCGCCGCATGCATAGACTTTTGCTGCAAGC
TCAAAGTTAGCAAGAATATGGTCACAAAAAGTGCAGAAAGCATAAAATTT
CATGTCGCAGAGAATTCTCTTAGCAATCTTGGTgccgcaggcgaaaattt
tGGTCTAAGAAATGTCATACAGCTTAAAGAAGGCCTTAAAAGGTCAAAGG
TAGCCAGAAAATCGTCAAAAACTACAGACCCCTTCACATTCTGTTTggaa
aactttgacctttttggtcaattttttttttggggggggcgGGGTGGCGA
CATGCAAAAAGTCAATGCAAAAAGGTTGACTCTGCTTGAGCAAAGCGagc
aaaaattttttccagAATAGAccttaaatttgaccaaaactTTAGTAAAA
TGCTAGAAATGAATAAGAGAGTGGAAAAACCATCAAGGGATCTTGAACTT
TCATCGAAAATGGGAGCTTATCTGgtgataaaatttcaaatagtaGAAAG
TAACGGATAAAGATATTAATTTGATACTATCTCTagatcaaaaaaatttg
aaagaaactaCTGCGAGCGAAGTGAGCGAAAACAAATTAATGATTTCTAA
AGTTATTTCTGGTCTTAGGGCGCGATTTAAAGCGAATTTAGGATAATTTT
AAGATTTGGGCGTTCAAAAAAGCTCAACTTCCCAAAAGGAAGTTatcagt
tttaaaacaaaagcatcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022485XLOC_022485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037754-exon-sc0001706-1491911889:14091..14858TCONS_00037754-exon-sc0001706-1491911889:14091..14858Clytia hemisphaericaexon
TCONS_00037754-exon-sc0001706-1510915933:14091..14858TCONS_00037754-exon-sc0001706-1510915933:14091..14858Clytia hemisphaericaexon
TCONS_00037754-exon-sc0001706-1575043694:14091..14858TCONS_00037754-exon-sc0001706-1575043694:14091..14858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001706supercontigsc0001706:14091..14858 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.14372	0.140608	0.42794	0.135266	0.652769	0.534725	0.053482	0.066246	0.5144	0.295878	0.126629	0.43835	0.468498	0.232048	0.142932	0.195334	0.269865	0.141197	0.245452	0.179584	0.0727694	0.198474	0	0.121629	0	0.278627	0.140886	0.21531
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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