TCONS_00037751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037751
Unique NameTCONS_00037751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037751 ID=TCONS_00037751|Name=TCONS_00037751|organism=Clytia hemisphaerica|type=transcript|length=873bp
AACAAACAATCTTTGtgaattgaaaacaaaccagAACAAACTGTAGCTGA
TTTCAAACTCTTCAAATGTATGCACCTTTCACTGAAACTTGATACACCTG
CTTGCGAGCAGcctttcaaattaaaatttgattgcTTACCCATTTTTCAA
ACTGTATAAATTATGATTTATTGATACCCAAATTACCGTCAGCCACGCCC
CGAATCATGAACAATAATGAACAAACGTTGTATAGAAACCACATGTTAAA
TCAAACCCAAGCAACTTAATTATTAATGCTCTGATTTGATTATTTGTGGA
AACCAAACGTCTATGGCAGCATCCAACATGGATTCAATCGATTTTTAAAC
CGATGGCCGCTCTTCAGATAAATACCAACCTTGTGTCGGACACGATGTGA
CTATTGAAAACGTCAACGACTGCTCCTCTTTTGTTTATGAGCAAATCACA
TTGATGTTTATCGTACAAACTATTTGTATTGAGATCATATGAATCACCTA
AACGTTGAGCACGATGACTTTCCGATTTTCGATGAGTATGATAAGACTTT
TAGATCTTTCTTAGCTGAATTTAATGAACTGTCTTCCGTTGCTGAATTGA
GTGACAACCAGAAGCTGACTCTACTACCAACCCGTTCGAGACGAAGACCA
AAATGGTATTTCCGAGGACCAAGCAACGAGCGAAAGAATACGTATGATAA
AGCCATTGAAAGTCTGACTACTGAGTTTGACAATGAATCTCTTTTGAGAA
AGGATCTCTATTCTATCAAACAGGGTCAATCTACGTTAGATGAATATGTT
GAGAAAATGGAACAAATGTTTACCGAGCTGAATGTTAAACCAGATGAAAA
GTTAGATTTCTTTATGGCTGGTT
Run BLAST on NCBI

protein sequence of TCONS_00037751-protein

>TCONS_00037751-protein ID=TCONS_00037751-protein|Name=TCONS_00037751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MNHLNVEHDDFPIFDEYDKTFRSFLAEFNELSSVAELSDNQKLTLLPTRS
RRRPKWYFRGPSNERKNTYDKAIESLTTEFDNESLLRKDLYSIKQGQSTL
DEYVEKMEQMFTELNVKPDEKLDFFMAG
Run BLAST on NCBI

transcript from alignment at sc0001705:27480..28352

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037751 ID=TCONS_00037751|Name=TCONS_00037751|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at sc0001705:27480..28352 (Clytia hemisphaerica)
AACCAGCCATAAAGAAATCTAACTTTTCATCTGGTTTAACATTCAGCTCG
GTAAACATTTGTTCCATTTTCTCAACATATTCATCTAACGTAGATTGACC
CTGTTTGATAGAATAGAGATCCTTTCTCAAAAGAGATTCATTGTCAAACT
CAGTAGTCAGACTTTCAATGGCTTTATCATACGTATTCTTTCGCTCGTTG
CTTGGTCCTCGGAAATACCATTTTGGTCTTCGTCTCGAACGGGTTGGTAG
TAGAGTCAGCTTCTGGTTGTCACTCAATTCAGCAACGGAAGACAGTTCAT
TAAATTCAGCTAAGAAAGATCTAAAAGTCTTATCATACTCATCGAAAATC
GGAAAGTCATCGTGCTCAACGTTTAGGTGATTCATATGATCTCAATACAA
ATAGTTTGTACGATAAACATCAATGTGATTTGCTCATAAACAAAAGAGGA
GCAGTCGTTGACGTTTTCAATAGTCACATCGTGTCCGACACAAGGTTGGT
ATTTATCTGAAGAGCGGCCATCGGTTTAAAAATCGATTGAATCCATGTTG
GATGCTGCCATAGACGTTTGGTTTCCACAAATAATCAAATCAGAGCATTA
ATAATTAAGTTGCTTGGGTTTGATTTAACATGTGGTTTCTATACAACGTT
TGTTCATTATTGTTCATGATTCGGGGCGTGGCTGACGGTAATTTGGGTAT
CAATAAATCATAATTTATACAGTTTGAAAAATGGGTAAgcaatcaaattt
taatttgaaaggCTGCTCGCAAGCAGGTGTATCAAGTTTCAGTGAAAGGT
GCATACATTTGAAGAGTTTGAAATCAGCTACAGTTTGTTctggtttgttt
tcaattcaCAAAGATTGTTTGTT

Coding sequence (CDS) from alignment at sc0001705:27480..28352

>TCONS_00037751 ID=TCONS_00037751|Name=TCONS_00037751|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0001705:27480..28352 (Clytia hemisphaerica)
ACCAGCCATAAAGAAATCTAACTTTTCATCTGGTTTAACATTCAGCTCGG
TAAACATTTGTTCCATTTTCTCAACATATTCATCTAACGTAGATTGACCC
TGTTTGATAGAATAGAGATCCTTTCTCAAAAGAGATTCATTGTCAAACTC
AGTAGTCAGACTTTCAATGGCTTTATCATACGTATTCTTTCGCTCGTTGC
TTGGTCCTCGGAAATACCATTTTGGTCTTCGTCTCGAACGGGTTGGTAGT
AGAGTCAGCTTCTGGTTGTCACTCAATTCAGCAACGGAAGACAGTTCATT
AAATTCAGCTAAGAAAGATCTAAAAGTCTTATCATACTCATCGAAAATCG
GAAAGTCATCGTGCTCAACGTTTAGGTGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022482XLOC_022482Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037751-proteinTCONS_00037751-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037751-exon-sc0001705-1491911889:27480..28352TCONS_00037751-exon-sc0001705-1491911889:27480..28352Clytia hemisphaericaexon
TCONS_00037751-exon-sc0001705-1510915933:27480..28352TCONS_00037751-exon-sc0001705-1510915933:27480..28352Clytia hemisphaericaexon
TCONS_00037751-exon-sc0001705-1575043694:27480..28352TCONS_00037751-exon-sc0001705-1575043694:27480..28352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001705supercontigsc0001705:27480..28352 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0118515	0.270349	0.350765	0.455278	1.96285	2.41481	7.414	10.8796	7.41811	3.03201	5.29564	5.91606	19.5594	19.4549	16.2079	30.1885	20.9355	22.8037	2.13896	2.63085	19.4481	20.8748	20.9097	21.7476	0.487564	2.39047	5.14339	2.30784	0.393626	0.229702
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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