TCONS_00037749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037749
Unique NameTCONS_00037749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037749 ID=TCONS_00037749|Name=TCONS_00037749|organism=Clytia hemisphaerica|type=transcript|length=548bp
AGATAATATCATATTACAACAATACCATTCACCATTCTTTTCCAGCCAAT
TCTATCTTGCGCCAAATCAAACCAATTAATTACAGGCACATTAGCCTTAT
TCATACACTTTTTCAAACCACGGCCATAAGTAAATTCAGGTGAACCACTT
GGGCGGTTACACCTTACCCATGACGATAACATTTTCCGTGGAAGACGTTC
AAAATTCATTCTAGCAACATGCCCTGCCCATGAGAGCTGCCTTTTCGTGA
TGTAACTATCAATAGACAACAAGCCAATACCATTCAACAACTCCTCATTT
GAGATTCTATATCGCCTGACATGTAACATATTAACTCTACACATTGCTCT
GACACAATTACGATGGAACATACGTAAAAGATTGAATAACTTCTCTGTAA
GACTCCATGATTCTGATCCATAAAGAGCAATCAAAAGCACTAAGCTTTCA
TAAACAGATGCCTTGACTTTATTGGAGACATTTGCATTGGAGAAAATCGA
TTTTCTTAGAGCGCCAAAAGCATTGCTAGCTCTTTTGATACGGTTAGN
Run BLAST on NCBI

transcript from alignment at sc0001705:21503..22050

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037749 ID=TCONS_00037749|Name=TCONS_00037749|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at sc0001705:21503..22050 (Clytia hemisphaerica)
NCTAACCGTATCAAAAGAGCTAGCAATGCTTTTGGCGCTCTAAGAAAATC
GATTTTCTCCAATGCAAATGTCTCCAATAAAGTCAAGGCATCTGTTTATG
AAAGCTTAGTGCTTTTGATTGCTCTTTATGGATCAGAATCATGGAGTCTT
ACAGAGAAGTTATTCAATCTTTTACGTATGTTCCATCGTAATTGTGTCAG
AGCAATGTGTAGAGTTAATATGTTACATGTCAGGCGATATAGAATCTCAA
ATGAGGAGTTGTTGAATGGTATTGGCTTGTTGTCTATTGATAGTTACATC
ACGAAAAGGCAGCTCTCATGGGCAGGGCATGTTGCTAGAATGAATTTTGA
ACGTCTTCCACGGAAAATGTTATCGTCATGGGTAAGGTGTAACCGCCCAA
GTGGTTCACCTGAATTTACTTATGGCCGTGGTTTGAAAAAGTGTATGAAT
AAGGCTAATGTGCCTGTAATTAATTGGTTTGATTTGGCGCAAGATAGAAT
TGGCTGGAAAAGAATGGTGAATGGTATTGTTGTAATATGATATTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022480XLOC_022480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037749-exon-sc0001705-1491911889:21503..22050TCONS_00037749-exon-sc0001705-1491911889:21503..22050Clytia hemisphaericaexon
TCONS_00037749-exon-sc0001705-1510915933:21503..22050TCONS_00037749-exon-sc0001705-1510915933:21503..22050Clytia hemisphaericaexon
TCONS_00037749-exon-sc0001705-1575043694:21503..22050TCONS_00037749-exon-sc0001705-1575043694:21503..22050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001705supercontigsc0001705:21503..22050 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28367	0.397197	2.74083	0.927897	0	0.241006	0.143526	0.647934	0.117595	0.634094	0	0	0	0.10332	0	0.108871	0	0	0.144501	0.507932	0	0.164122	0.239989	0.184608	0.244517	0.770025	0	0.400269	0.389877	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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