TCONS_00037747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037747
Unique NameTCONS_00037747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037747 ID=TCONS_00037747|Name=TCONS_00037747|organism=Clytia hemisphaerica|type=transcript|length=401bp
atatagcgcttttgactCTCTAAAACAAGAAAGATTCCACAATTTTATTT
GAGACCAACTCTTTCCATTTTTTCGCATGACCAGGTGGTGAAGACGAAGA
TATGATGGCTCCACAAGTCATGTTAGATGAAAACGGTGAAGTTGTCATCA
ATGAAACCAGTTTGACTATCCGTAAGGCAGTGGATGACAGCGAACTTAAA
AAAAGTGCTGTCTTGTACGAAGATTCCATGTCTACCAACACTCACAGACG
TCGTGTGTCAAGGGTCAAACGCTGGCGTATGGATGGTAAGGGTCTGTTTA
GACTTTGTGTTGTTTTCAATGATatacacacccccttctcatcaCAGACC
GACTGGGAACCtttcccactgaaaaaaattgccaaaaatatgatccccac
t
Run BLAST on NCBI

protein sequence of TCONS_00037747-protein

>TCONS_00037747-protein ID=TCONS_00037747-protein|Name=TCONS_00037747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MMAPQVMLDENGEVVINETSLTIRKAVDDSELKKSAVLYEDSMSTNTHRR
RVSRVKRWRMDGKGLFRLCVVFNDIHTPFSSQTDWEPFPLKKIAKNMIPT
Run BLAST on NCBI

transcript from alignment at sc0001705:1676..4583-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037747 ID=TCONS_00037747|Name=TCONS_00037747|organism=Clytia hemisphaerica|type=transcript|length=2908bp|location=Sequence derived from alignment at sc0001705:1676..4583- (Clytia hemisphaerica)
ATATAGCGCTTTTGACTCTCTAAAACAAGAAAGATTCCACAATTTTATTT
GAGACCAACTCTTTCCATTTTTTCGCATGACCAGGTGGTGAAGACGAAGA
TATGATGGCTCCACAAGTCATGTTAGATGAAAACGGTGAAGTTGTCATCA
ATGAAACCAGGTATAAAAGTTCTTCAATTACCTTAATTCACTCTATTGAG
CCCATTCTATTTTATGTCAACAATAAACAAACATTCCATGAACTAAATTG
AGCAAAATATCCGTGCGTCAATTTAACTGACTTTTCATTTTTCAAGGGGG
TAAAAACGAATTTATTTGTTTTTTTATAAGCATACAAAACCCAAAAGTTG
GCTCTGAAATGCTTTAGATCGAGAGATTTACAAAGCTGAAAAATGCTTTG
AGGGATGCTTATATCATAAGCAACATTTTAGAGAAATTTCGAAAATCTAG
CCAAAAACAAACAAATTCTGAAAATGAAAGCTCAAAGTAATGTTTAGCAT
ATGCTTAAATTTTTTCCATATATGAGCCTAGATATGCTTACAAGCGCAAT
GCTTATATAAAAAACATGTAGTTCGTCCACTGTCACTTTAAGGCATGAAA
AGAAATATTCCAGGGTTTCTTGAAAATTTTTCAATTTTCCAGGGCGGAAA
ATGAAAAATGTTTTTTGACTTGAAAAGGCTCTTCCAACCACCCTGTATGG
AAATTTAACGGGATGGCCCATTCATACTAACGAGTTTATGCATCGGAGGA
TATCGAGGGCGACGGCAAGTGAAATCAACGCAAAACAAAAGTTGATAGTT
GATGTACGGCTCTATATCGCTCACCTAGACAGACGACGGTATTTTGGTGT
TTTTACACCGTCGGCAAGCAAATTGGATGGAAATTTTGGTTACATGTCAA
CTTTGCTTTGAACCGTCTCTTTCGATTTATTTCGAAAACATAAACTCACT
ACTACGCTGTTAGGGGTGGTTTAGACTAACCAAGCTGATATAGCCACGGG
ATTTCGCAAAATTTAATCAGGACATTCGCCTTATTTGTTCATTTTGTGAT
GGTTGTCTGTCCACTTTCAGGATTGGGATTTGTGTTTACTACAATTCACT
TTCATTTTTCTAATTATCATCTTTCTGAAGAGTTGCAACAGAAAAATAGA
GCGTTTAAGTTTGAACGTGTATCAGTATTAACCATTGAGTTTAAAGCCCG
AAGGGCTAGAATAGAATCTTTAACCTTTCCCAGGCAAAAAAAAGGGAAGT
CAATTTTTTCCCCATCCAGATTGCGCCTAGAACGCGCCACAATTATGACA
ACGGATTGTATCTAGCAGTTCCTTTGTTTTTGAGGACTGCATTTTTTGAA
ATCTAGCGATGGATTTTACTTTCAATCCGGCGTTTGTGTAAAAACCACGC
GCGGGCGTTCTTGATGGGAAAAAGTGGTTTCATTTCCCATCCAGGAGTCT
TGAGTCTATTGACCGCTTTTTCTGTAAGCCTAAGATGACAAAAAGAATAA
TTTGATGGTATTTTAAGTGTTTCCGACCCCCGTACATCCGCCCAGCGACG
GAAAGGAACCGATTGGAACACTGAACATTGAAAATTCCTTTAATACTTGT
GTTTCAGTTTGACTATCCGTAAGGCAGTGGATGACAGCGAACTTAAAAAA
AGGTAAGGCCTGAATTTTTTTTTTTAATTATGAATAGAAAATGAAAAAAA
AACTGATTTATCGAAATGTTTAGAGCTAGGTATCTTTAGTAATTGTTTAA
CTAACTCCGATGAGTTTTCATTTATTTGCAAATTTGGACTGTTTGGCTGG
TCAGAATTTAAAGAACGATTATTAAACATATCTCATAATATTTGCATTCT
TAAACACAGAAGGAGACATAGCTTTCTCCTCTCCCTCCCGCGCGAGCACA
AACAAAACAAATTCTTTTGTTTAACCGACCGAGCCAGCCAAGTCACCAGC
CAAGTCACTACTTAATTTTAACCAGATCCTCACACCGGTCTTGTTTGCTT
TGGCCGAATTCAGATTCTGATCTGGTTCGGTGTGGTGGAACCAAAACTTT
GCAAATCATCCCCACTGAGCCATTTTTATCACTTAACAAAACTTCAAGGT
TTATACTATAGGTCCAGAAAATAAAACGGAAAAACCTCATATTTCATTAA
CTAAAGTTGCTGATAATTCAAATGGCCCCTCGATAGAAATCTATCTATTA
TACTCCGGGATATACAGCCATCCATAAACCGTTTTTCGATTCTACAATCA
TCATGGTCAAAATATATTGACATTTTAGTGCATTTTTACGTTTTTCAGAC
TTTAAAGTTCGTGTTCGGGCGAGAATTGCTAATTATAAGCACTTTTACTT
TCTTTCATTGAATATTTTGATTTTAGAGGGGTTCGGTGGCTTCTAGGCTA
TATTCCAAGCCTTATTCGAGCAAATACTATGAGTATGAGCTTTTAAATTC
TGAGATCCTAAGGTCCTAAGTTTTAAGTCTCATGGTAAAACTCAAGAGTT
AAAACTCTACTTTCCAACTGTAGTTTAAGGCGCTTAAAAATCATTTGTGG
TGTTTAAAATTTCGCTGAGAAATCCCCTTTCTTTGTCTCAATTTTGTCCC
AATTTTGTCCATGATTGTAGTTGGTACAATTTTGATGCTGGTTATTTTAA
TTAGTTTGCTACTGCAATCCTGAGATTTTCAGATTTCATTTTTTACATTC
TAACATCTTCAGTGCTGTCTTGTACGAAGATTCCATGTCTACCAACACTC
ACAGACGTCGTGTGTCAAGGGTCAAACGCTGGCGTATGGATGGTAAGGGT
CTGTTTAGACTTTGTGTTGTTTTCAATGATATACACACCCCCTTCTCATC
ACAGACCGACTGGGAACCTTTCCCACTGAAAAAAATTGCCAAAAATATGA
TCCCCACT

Coding sequence (CDS) from alignment at sc0001705:1676..4583-

>TCONS_00037747 ID=TCONS_00037747|Name=TCONS_00037747|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0001705:1676..4583- (Clytia hemisphaerica)
TGCTGTCTTGTACGAAGATTCCATGTCTACCAACACTCACAGACGTCGTG
TGTCAAGGGTCAAACGCTGGCGTATGGATGGTAAGGGTCTGTTTAGACTT
TGTGTTGTTTTCAATGATATACACACCCCCTTCTCATCACAGACCGACTG
GGAACCTTTCCCACTGAAAAAAATTGCCAAAAATATGATCCCCACTTTTG
ACTATCCGTAAGGCAGTGGATGACAGCGAACTTAAAAAAAGATGATGGCT
CCACAAGTCATGTTAGATGAAAACGGTGAAGTTGTCATCAATGAAACCAG
TGCTGTCTTGTACGAAGATTCCATGTCTACCAACACTCACAGACGTCGTG
TGTCAAGGGTCAAACGCTGGCGTATGGATGGTAAGGGTCTGTTTAGACTT
TGTGTTGTTTTCAATGATATACACACCCCCTTCTCATCACAGACCGACTG
GGAACCTTTCCCACTGAAAAAAATTGCCAAAAATATGATCCCCACTTTTG
ACTATCCGTAAGGCAGTGGATGACAGCGAACTTAAAAAAAGATGATGGCT
CCACAAGTCATGTTAGATGAAAACGGTGAAGTTGTCATCAATGAAACCAG
TGCTGTCTTGTACGAAGATTCCATGTCTACCAACACTCACAGACGTCGTG
TGTCAAGGGTCAAACGCTGGCGTATGGATGGTAAGGGTCTGTTTAGACTT
TGTGTTGTTTTCAATGATATACACACCCCCTTCTCATCACAGACCGACTG
GGAACCTTTCCCACTGAAAAAAATTGCCAAAAATATGATCCCCACTTTTG
ACTATCCGTAAGGCAGTGGATGACAGCGAACTTAAAAAAAGATGATGGCT
CCACAAGTCATGTTAGATGAAAACGGTGAAGTTGTCATCAATGAAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022478XLOC_022478Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037747-proteinTCONS_00037747-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037747-exon-sc0001705-1575043694:4424..4583TCONS_00037747-exon-sc0001705-1575043694:4424..4583Clytia hemisphaericaexon
TCONS_00037747-exon-sc0001705-1575043694:2932..2976TCONS_00037747-exon-sc0001705-1575043694:2932..2976Clytia hemisphaericaexon
TCONS_00037747-exon-sc0001705-1575043694:1676..1871TCONS_00037747-exon-sc0001705-1575043694:1676..1871Clytia hemisphaericaexon
TCONS_00037747-exon-sc0001705-1510915933:4424..4583TCONS_00037747-exon-sc0001705-1510915933:4424..4583Clytia hemisphaericaexon
TCONS_00037747-exon-sc0001705-1510915933:2932..2976TCONS_00037747-exon-sc0001705-1510915933:2932..2976Clytia hemisphaericaexon
TCONS_00037747-exon-sc0001705-1510915933:1676..1871TCONS_00037747-exon-sc0001705-1510915933:1676..1871Clytia hemisphaericaexon
TCONS_00037747-exon-sc0001705-1491911889:4424..4583TCONS_00037747-exon-sc0001705-1491911889:4424..4583Clytia hemisphaericaexon
TCONS_00037747-exon-sc0001705-1491911889:2932..2976TCONS_00037747-exon-sc0001705-1491911889:2932..2976Clytia hemisphaericaexon
TCONS_00037747-exon-sc0001705-1491911889:1676..1871TCONS_00037747-exon-sc0001705-1491911889:1676..1871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001705supercontigsc0001705:1676..4583 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.95906	2.21926	0.254969	1.77084	0.425064	0.944037	0	0.419376	8.77882	6.37687	4.32671	5.77476	4.41188	3.2105	4.18567	4.91418	5.77909	6.57292	2.49013	2.61991	2.55625	5.63601	5.32047	7.23852	0	0	2.39984	1.85729	4.80611	4.5076
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top