TCONS_00037733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037733
Unique NameTCONS_00037733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037733 ID=TCONS_00037733|Name=TCONS_00037733|organism=Clytia hemisphaerica|type=transcript|length=578bp
ATCGCAATTCTGAGAAACTGCTTGGctgtttttttggattttcattgaGT
CGTTTACATCATTATTATAAAAGTTTAAACCGTTTTTAAAACTGGTTTGA
TTAAACTGGTGTTCTTGGCTTCTATCTTTAATTGCCATCGTTTTTCGTTG
ATCATTGGTTTGGTTTGGACTTTCAATCAAATCGACATCAAACAACACAA
AGCCTGCCCTGCTgctattgtttattttttggtCAACTGGTGGTTGATGg
tcttattttcaaatcagggaagtaaattttttaattgtgtGTGTGCTACA
CAATACTATTAGTTTTAATATTTGTTCTTGATCTTGGAGTACCTATCCTG
CCTCCTTGCTTTTCTTTCTATCTATAACTAAAGAGACCCATTGTTCTAAC
TTTTGCCACACGCACCAAATTAAATAGATATTTTTGGGTATCATCATTTT
GATAATATGTCGGCTTCTTCAGACAGAATTAGTCCTATAGGACTTACCAA
TTTCGGCCAAAATGTGTGTTTTTTTAATTCCGTTATTCAAGCATTGTATT
CAGTCAATGCCTTTCGGAAGTTTGTTTG
Run BLAST on NCBI

transcript from alignment at sc0001701:33835..34412

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037733 ID=TCONS_00037733|Name=TCONS_00037733|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at sc0001701:33835..34412 (Clytia hemisphaerica)
CAAACAAACTTCCGAAAGGCATTGACTGAATACAATGCTTGAATAACGGA
ATTAAAAAAACACACATTTTGGCCGAAATTGGTAAGTCCTATAGGACTAA
TTCTGTCTGAAGAAGCCGACATATTATCAAAATGATGATACCCAAAAATA
TCTATTTAATTTGGTGCGTGTGGCAAAAGTTAGAACAATGGGTCTCTTTA
GTTATAGATAGAAAGAAAAGCAAGGAGGCAGGATAGGTACTCCAAGATCA
AGAACAAATATTAAAACTAATAGTATTGTGTAGCACACacacaattaaaa
aatttacttccctgatttgaaaataagacCATCAACCACCAGTTGaccaa
aaaataaacaatagcAGCAGGGCAGGCTTTGTGTTGTTTGATGTCGATTT
GATTGAAAGTCCAAACCAAACCAATGATCAACGAAAAACGATGGCAATTA
AAGATAGAAGCCAAGAACACCAGTTTAATCAAACCAGTTTTAAAAACGGT
TTAAACTTTTATAATAATGATGTAAACGACtcaatgaaaatccaaaaaaa
cagCCAAGCAGTTTCTCAGAATTGCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022466XLOC_022466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037733-exon-sc0001701-1491911889:33835..34412TCONS_00037733-exon-sc0001701-1491911889:33835..34412Clytia hemisphaericaexon
TCONS_00037733-exon-sc0001701-1510915933:33835..34412TCONS_00037733-exon-sc0001701-1510915933:33835..34412Clytia hemisphaericaexon
TCONS_00037733-exon-sc0001701-1575043694:33835..34412TCONS_00037733-exon-sc0001701-1575043694:33835..34412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001701supercontigsc0001701:33835..34412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0961456	0.0937571	0.217722	0.745525	0	0.204915	0.247221	0.115723	0.0810201	0	0	0.0640325	0	0.464841	0	0.175765	0	0.0739782	0.306615	0.2139	0.0929591	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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