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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037729 ID=TCONS_00037729|Name=TCONS_00037729|organism=Clytia hemisphaerica|type=transcript|length=1829bp
AACTGAAATATTACGACATGTCTTCCAATAACGAGGAAAGTTCTTTATCA
AGCTCACTTGACTCTTCTTCGGATGAGGGCCATAGCAGCGGCAATGAGGC
CGATTCTGAAAGTGAAAACTTTGAACGAGATATGAGGCAAATAGTAAACT
TGATGAGGACTTTTAACCCATACATGTATGAGCCAGAGAGGGAAGTTTCA
GATACTTCGAACGAAAGCTCTTCTGAAGAGAGCACCGAGGAGAGAACTTC
CTCAGAGGAGATTGGTGCCACAGCAGCCCCTGACATAGGATTAAGAGTCG
GCAATCTTGATTGGTGTAAATGTGAGCATTGTCGGGTTGAGACAAGGGAA
ATAGACTGTCTTTGCTGTAATGAAGTGGATGCCTTGAATAGCAAATTTGA
TGCAGAACAACCACTGGATTGCATTACAGGCTCAGAGGAATTCAAAATGT
TGTGCACAAATAAAACGGTGCTTAAAAATGTACTTGTGGCTTTTCATGAG
ACCAAAGGAGATCATTTGGAACCAACACCTACAAATAAATCTCTAAGATA
TGCTGCCTATAAGCAATTTATATGGTGGGTATTCAACTATTTGGGGAGTG
GTCAAAGAAGAGTCATCCCGTCTTGTGCTCTATGGTTGATACGATCACTT
TTTCCAGAGGCAGACGAGAATTACACAAAGTACTCTGAAGGGAAGAAAGA
CTAATTATACAGATTGTTGATACTTTATCATGATAGTATATACGATTGTT
ATATGGTTATATGATATATATGAAAAGTTAAACATAAAAAGCCAAATATA
TATGATATATATGAAAGATATTACCTAGATATAATGAAATGAAATCAAAG
AAGAATCCTTAGACTATATGTACAGTGCATGCAGCATTCTAAAATATGAA
CCGTAAAAAGCTATATTACAAAAGTTTACAAAAACTAAGCAACCTTATTT
CCAAAACGCGAACGTTGGTTTTCAATCACTGTTTTCTTATCTGGCTTAGG
AATAGGTGCGATATTCTTTGGTAGGtctggaaaatttggcttttCGGGAA
TCTCTTTGCGTTCTACACAGTTAATAGTTTCCTGGACCATTTCGTGTAAA
TAGTCTGTGCTCTTTTGTTCTTTAATGGGTTTCGAAGCCCAGTTGGATGT
GATTTTTGACCATGCAACGTTGGACCTTTCCTCTCCCTTCTTGGTCTTGG
CTTGTTGTAGTTTACTTCCTGCATTGAAGTCCATTATCGCAAGTTAAGTT
CTTGACACCATACCAGCATAAGAGAAATGTTGCCTCTTCGGTGCCCACTT
GTTATATAAAGAGTGATACACTTCTAATGTGCCGGTGTGGGAAAATTGGT
TCAAATGTTCAAAGTCCTTTAAAAGGTTTTTATCGAGAACAATATCCTGT
AAAGCTTGAAATGCCTCTGATTTAGCAGAAATCCATTCTTTAGCCTTTAC
TTGTTTTTTCGTCAATCTCGGGTGTTCGCATTTTCGAAACTTCTTATGAC
CAGTCCATCTATGCTTGTTTTGAACGTGGAAAAGAATACTGATCCATTTC
TCTTTCAAGAGCTCAACATCTCCCCCGCAAGTTGCACAGCACCACCATAA
ATGGTTTCCAATCGACTTGATCCATTTTTCCAAGATCTTgcatgttttct
ttttagctgCAGCCCTCAATTTCTTTTTGACACTTTTCACAAAGTGCCAG
ATGTCAAATTGGTGGTCAAGATCCGACTCCTCCTCACGTAAATGTTGATC
GGTCGTAATTTGTTTGGGTTCGATTCCTTCGTCTCTCAATGATTGTAAGG
CTCTTTTGAATCCAACCTTTTCCATCCGG Run BLAST on NCBI protein sequence of TCONS_00037729-protein >TCONS_00037729-protein ID=TCONS_00037729-protein|Name=TCONS_00037729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
LKYYDMSSNNEESSLSSSLDSSSDEGHSSGNEADSESENFERDMRQIVNL
MRTFNPYMYEPEREVSDTSNESSSEESTEERTSSEEIGATAAPDIGLRVG
NLDWCKCEHCRVETREIDCLCCNEVDALNSKFDAEQPLDCITGSEEFKML
CTNKTVLKNVLVAFHETKGDHLEPTPTNKSLRYAAYKQFIWWVFNYLGSG
QRRVIPSCALWLIRSLFPEADENYTKYSEGKKD Run BLAST on NCBI transcript from alignment at sc0001701:12474..14302 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037729 ID=TCONS_00037729|Name=TCONS_00037729|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at sc0001701:12474..14302 (Clytia hemisphaerica)
CCGGATGGAAAAGGTTGGATTCAAAAGAGCCTTACAATCATTGAGAGACG
AAGGAATCGAACCCAAACAAATTACGACCGATCAACATTTACGTGAGGAG
GAGTCGGATCTTGACCACCAATTTGACATCTGGCACTTTGTGAAAAGTGT
CAAAAAGAAATTGAGGGCTGcagctaaaaagaaaacatgcAAGATCTTGG
AAAAATGGATCAAGTCGATTGGAAACCATTTATGGTGGTGCTGTGCAACT
TGCGGGGGAGATGTTGAGCTCTTGAAAGAGAAATGGATCAGTATTCTTTT
CCACGTTCAAAACAAGCATAGATGGACTGGTCATAAGAAGTTTCGAAAAT
GCGAACACCCGAGATTGACGAAAAAACAAGTAAAGGCTAAAGAATGGATT
TCTGCTAAATCAGAGGCATTTCAAGCTTTACAGGATATTGTTCTCGATAA
AAACCTTTTAAAGGACTTTGAACATTTGAACCAATTTTCCCACACCGGCA
CATTAGAAGTGTATCACTCTTTATATAACAAGTGGGCACCGAAGAGGCAA
CATTTCTCTTATGCTGGTATGGTGTCAAGAACTTAACTTGCGATAATGGA
CTTCAATGCAGGAAGTAAACTACAACAAGCCAAGACCAAGAAGGGAGAGG
AAAGGTCCAACGTTGCATGGTCAAAAATCACATCCAACTGGGCTTCGAAA
CCCATTAAAGAACAAAAGAGCACAGACTATTTACACGAAATGGTCCAGGA
AACTATTAACTGTGTAGAACGCAAAGAGATTCCCGaaaagccaaattttc
cagaCCTACCAAAGAATATCGCACCTATTCCTAAGCCAGATAAGAAAACA
GTGATTGAAAACCAACGTTCGCGTTTTGGAAATAAGGTTGCTTAGTTTTT
GTAAACTTTTGTAATATAGCTTTTTACGGTTCATATTTTAGAATGCTGCA
TGCACTGTACATATAGTCTAAGGATTCTTCTTTGATTTCATTTCATTATA
TCTAGGTAATATCTTTCATATATATCATATATATTTGGCTTTTTATGTTT
AACTTTTCATATATATCATATAACCATATAACAATCGTATATACTATCAT
GATAAAGTATCAACAATCTGTATAATTAGTCTTTCTTCCCTTCAGAGTAC
TTTGTGTAATTCTCGTCTGCCTCTGGAAAAAGTGATCGTATCAACCATAG
AGCACAAGACGGGATGACTCTTCTTTGACCACTCCCCAAATAGTTGAATA
CCCACCATATAAATTGCTTATAGGCAGCATATCTTAGAGATTTATTTGTA
GGTGTTGGTTCCAAATGATCTCCTTTGGTCTCATGAAAAGCCACAAGTAC
ATTTTTAAGCACCGTTTTATTTGTGCACAACATTTTGAATTCCTCTGAGC
CTGTAATGCAATCCAGTGGTTGTTCTGCATCAAATTTGCTATTCAAGGCA
TCCACTTCATTACAGCAAAGACAGTCTATTTCCCTTGTCTCAACCCGACA
ATGCTCACATTTACACCAATCAAGATTGCCGACTCTTAATCCTATGTCAG
GGGCTGCTGTGGCACCAATCTCCTCTGAGGAAGTTCTCTCCTCGGTGCTC
TCTTCAGAAGAGCTTTCGTTCGAAGTATCTGAAACTTCCCTCTCTGGCTC
ATACATGTATGGGTTAAAAGTCCTCATCAAGTTTACTATTTGCCTCATAT
CTCGTTCAAAGTTTTCACTTTCAGAATCGGCCTCATTGCCGCTGCTATGG
CCCTCATCCGAAGAAGAGTCAAGTGAGCTTGATAAAGAACTTTCCTCGTT
ATTGGAAGACATGTCGTAATATTTCAGTT Coding sequence (CDS) from alignment at sc0001701:12474..14302 >TCONS_00037729 ID=TCONS_00037729|Name=TCONS_00037729|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0001701:12474..14302 (Clytia hemisphaerica)
TTAGTCTTTCTTCCCTTCAGAGTACTTTGTGTAATTCTCGTCTGCCTCTG
GAAAAAGTGATCGTATCAACCATAGAGCACAAGACGGGATGACTCTTCTT
TGACCACTCCCCAAATAGTTGAATACCCACCATATAAATTGCTTATAGGC
AGCATATCTTAGAGATTTATTTGTAGGTGTTGGTTCCAAATGATCTCCTT
TGGTCTCATGAAAAGCCACAAGTACATTTTTAAGCACCGTTTTATTTGTG
CACAACATTTTGAATTCCTCTGAGCCTGTAATGCAATCCAGTGGTTGTTC
TGCATCAAATTTGCTATTCAAGGCATCCACTTCATTACAGCAAAGACAGT
CTATTTCCCTTGTCTCAACCCGACAATGCTCACATTTACACCAATCAAGA
TTGCCGACTCTTAATCCTATGTCAGGGGCTGCTGTGGCACCAATCTCCTC
TGAGGAAGTTCTCTCCTCGGTGCTCTCTTCAGAAGAGCTTTCGTTCGAAG
TATCTGAAACTTCCCTCTCTGGCTCATACATGTATGGGTTAAAAGTCCTC
ATCAAGTTTACTATTTGCCTCATATCTCGTTCAAAGTTTTCACTTTCAGA
ATCGGCCTCATTGCCGCTGCTATGGCCCTCATCCGAAGAAGAGTCAAGTG
AGCTTGATAAAGAACTTTCCTCGTTATTGGAAGACATGTCGTAATATTTC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037729-exon-sc0001701-1491911889:12474..14302 | TCONS_00037729-exon-sc0001701-1491911889:12474..14302 | Clytia hemisphaerica | exon |
| TCONS_00037729-exon-sc0001701-1510915933:12474..14302 | TCONS_00037729-exon-sc0001701-1510915933:12474..14302 | Clytia hemisphaerica | exon |
| TCONS_00037729-exon-sc0001701-1575043694:12474..14302 | TCONS_00037729-exon-sc0001701-1575043694:12474..14302 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001701 | supercontig | sc0001701:12474..14302 . |
Blast
The following BLAST results are available for this feature:
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