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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037727 ID=TCONS_00037727|Name=TCONS_00037727|organism=Clytia hemisphaerica|type=transcript|length=1131bp
AGTCACCGGAGCTACAAAAGAAGAACCTCAAAAAAGTCATTCAAAAGATC
GCTCAGCATGACATCAAAGCCATTTTCTGTGACGAGTTTGAGATAGATGA
TCATATTGAATTGCTGAAGAAAATGATGGAAACTGTGGATTTCTTATGGA
TCGTTCCATCGATCAGTAATTTAAGAGATTTCGAACAATGGGAAGGcgat
ttcatttttctcaatctctcgcaaaattttcgaaattcgcGAGAGATTGT
GAAAACAACATTATGGTATGCTGAACAGGAGAAATATATGTACAAAAAAG
GTCTCGTTATGCCTCTTGAAAACTTCCCATTTGGTCGCTCCCCCGTAATT
GTGCAAACCTTCGATAAAGCAATGAAAGAAGCACGAGAACGAACCAAAGG
TGGAATTTTAGTCATCAATGGCGATGATTCGCTGAAAGATATGGATAAAA
TTTTAAACCAGATGCATGAGACATGGAAGAACTATGATAGCTTTCGAAAT
GATTTCAAAGGAAATGAAAATCCATACACATTTCTCCATGAAGGAAATGT
TTTGATCGTTGATAGTTGGGTAACTTACGGATTCGAATGGAGCACAGTCA
TTATAACGGAGAGTGGTTTAAATCTTGGAGGCATTTCTCGTCATGTGTGT
AACCAGATGATGAGGTGTACCACACATCTCATCATGTGTAAGGAATAAAT
ACTTGGtaaacattgaaatttttccaaaGTCTTTAGATTTAGAATACCGG
GTATTGAAAATTAACAATCATTgaaaaaaagcggacaaattgTTATTCaa
gatatgcaccattgcatcTTCTGACatttacatcacggacccaatagctg
attggttgtaagtgacgtaaaatcagtcaatatgtcacttttaaccaatc
agctgttggatccccggaagacattgcagtggtgtaTATAATaaacataa
tttaaaattctCATAGTTTGTGTATgcgaaattttatgacttgtatGCTT
AATATTTCCATCTCGAAAACCTGTTAAATCATCTGGGGACTGAATACATA
TCGATTGAGCAGAGAATTTTTATCGTATTTCAATCTTTCTAAGCCCAGTT
TAGACGACGAGTTTTGAGGATTTCACTTGAG Run BLAST on NCBI protein sequence of TCONS_00037727-protein >TCONS_00037727-protein ID=TCONS_00037727-protein|Name=TCONS_00037727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
SPELQKKNLKKVIQKIAQHDIKAIFCDEFEIDDHIELLKKMMETVDFLWI
VPSISNLRDFEQWEGDFIFLNLSQNFRNSREIVKTTLWYAEQEKYMYKKG
LVMPLENFPFGRSPVIVQTFDKAMKEARERTKGGILVINGDDSLKDMDKI
LNQMHETWKNYDSFRNDFKGNENPYTFLHEGNVLIVDSWVTYGFEWSTVI
ITESGLNLGGISRHVCNQMMRCTTHLIMCKE Run BLAST on NCBI transcript from alignment at sc0001700:27466..28596 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037727 ID=TCONS_00037727|Name=TCONS_00037727|organism=Clytia hemisphaerica|type=transcript|length=1131bp|location=Sequence derived from alignment at sc0001700:27466..28596 (Clytia hemisphaerica)
CTCAAGTGAAATCCTCAAAACTCGTCGTCTAAACTGGGCTTAGAAAGATT
GAAATACGATAAAAATTCTCTGCTCAATCGATATGTATTCAGTCCCCAGA
TGATTTAACAGGTTTTCGAGATGGAAATATTAAGCatacaagtcataaaa
tttcgcATACACAAACTATGagaattttaaattatgtttATTATAtacac
cactgcaatgtcttccggggatccaacagctgattggttaaaagtgacat
attgactgattttacgtcacttacaaccaatcagctattgggtccgtgat
gtaaatGTCAGAAgatgcaatggtgcatatcttGAATAAcaatttgtccg
ctttttttcAATGATTGTTAATTTTCAATACCCGGTATTCTAAATCTAAA
GACtttggaaaaatttcaatgtttaCCAAGTATTTATTCCTTACACATGA
TGAGATGTGTGGTACACCTCATCATCTGGTTACACACATGACGAGAAATG
CCTCCAAGATTTAAACCACTCTCCGTTATAATGACTGTGCTCCATTCGAA
TCCGTAAGTTACCCAACTATCAACGATCAAAACATTTCCTTCATGGAGAA
ATGTGTATGGATTTTCATTTCCTTTGAAATCATTTCGAAAGCTATCATAG
TTCTTCCATGTCTCATGCATCTGGTTTAAAATTTTATCCATATCTTTCAG
CGAATCATCGCCATTGATGACTAAAATTCCACCTTTGGTTCGTTCTCGTG
CTTCTTTCATTGCTTTATCGAAGGTTTGCACAATTACGGGGGAGCGACCA
AATGGGAAGTTTTCAAGAGGCATAACGAGACCTTTTTTGTACATATATTT
CTCCTGTTCAGCATACCATAATGTTGTTTTCACAATCTCTCgcgaatttc
gaaaattttgcgagagattgagaaaaatgaaatcgCCTTCCCATTGTTCG
AAATCTCTTAAATTACTGATCGATGGAACGATCCATAAGAAATCCACAGT
TTCCATCATTTTCTTCAGCAATTCAATATGATCATCTATCTCAAACTCGT
CACAGAAAATGGCTTTGATGTCATGCTGAGCGATCTTTTGAATGACTTTT
TTGAGGTTCTTCTTTTGTAGCTCCGGTGACT Coding sequence (CDS) from alignment at sc0001700:27466..28596 >TCONS_00037727 ID=TCONS_00037727|Name=TCONS_00037727|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0001700:27466..28596 (Clytia hemisphaerica)
TTATTCCTTACACATGATGAGATGTGTGGTACACCTCATCATCTGGTTAC
ACACATGACGAGAAATGCCTCCAAGATTTAAACCACTCTCCGTTATAATG
ACTGTGCTCCATTCGAATCCGTAAGTTACCCAACTATCAACGATCAAAAC
ATTTCCTTCATGGAGAAATGTGTATGGATTTTCATTTCCTTTGAAATCAT
TTCGAAAGCTATCATAGTTCTTCCATGTCTCATGCATCTGGTTTAAAATT
TTATCCATATCTTTCAGCGAATCATCGCCATTGATGACTAAAATTCCACC
TTTGGTTCGTTCTCGTGCTTCTTTCATTGCTTTATCGAAGGTTTGCACAA
TTACGGGGGAGCGACCAAATGGGAAGTTTTCAAGAGGCATAACGAGACCT
TTTTTGTACATATATTTCTCCTGTTCAGCATACCATAATGTTGTTTTCAC
AATCTCTCgcgaatttcgaaaattttgcgagagattgagaaaaatgaaat
cgCCTTCCCATTGTTCGAAATCTCTTAAATTACTGATCGATGGAACGATC
CATAAGAAATCCACAGTTTCCATCATTTTCTTCAGCAATTCAATATGATC
ATCTATCTCAAACTCGTCACAGAAAATGGCTTTGATGTCATGCTGAGCGA
TCTTTTGAATGACTTTTTTGAGGTTCTTCTTTTGTAGCTCCGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037727-exon-sc0001700-1491911889:27466..28596 | TCONS_00037727-exon-sc0001700-1491911889:27466..28596 | Clytia hemisphaerica | exon |
| TCONS_00037727-exon-sc0001700-1510915933:27466..28596 | TCONS_00037727-exon-sc0001700-1510915933:27466..28596 | Clytia hemisphaerica | exon |
| TCONS_00037727-exon-sc0001700-1575043694:27466..28596 | TCONS_00037727-exon-sc0001700-1575043694:27466..28596 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001700 | supercontig | sc0001700:27466..28596 . |
Blast
The following BLAST results are available for this feature:
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