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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037724 ID=TCONS_00037724|Name=TCONS_00037724|organism=Clytia hemisphaerica|type=transcript|length=951bp
CAATCCCCTGTCAAAATTACTAAAATCCGGTCAGACATCAACAACAATGA
CATTGTGGTTAGAGATGAGTCTGAAGTCATTTTATCACAAGCTTCTTCAT
CCTTTTTACCAGATGAACGTCTGTCTTCCAAAGCCATCAATTCAATCACG
GATTTGTTTTCTTTGGCTCCGAAACAATTAGTGAGACAAGTAAAATGTCA
TGTTACCAGAGTTTTTGATGTTACAGATCACAAGACCAGAGATgggaaaa
tgattgacagacaAGAAATGACTGTAAGTGACAAAACAAATTCAATCAAG
TTAATCTTGTATGGTACTGATGTCAAATCTCTAGAAGAAGGCAATTCATA
CATTCTCAAAAATGTTCGACTCAACATATATAATGACAGAGTGTACCTAA
ATTCATCATCTGAAAGGCCCTTTCAAGctgtcaaaacaaaaaagattgaG
GCTATTGATTTGAGTGCCTCAACTGAAGTTTCCATAATGGCCAAAATAAT
TGGTATTAGTAGCATTCACATGAACTTCTTCTGTATAATGTGCAACAAAA
TCCTCCATGATATTGATCATTCTGATGTTGTATGTGGTAATCAATCATGC
AAGGCTCAAATGCTGCTGGATAGTTGTCGCCAGGGTATTAATTTCACTCT
AATTTTCAGTAACATAGAGAACAGCGAAAGAGTTACTCTATTCTTCAGTA
TGGATAAGGTCAAACAACTTCAGAACATAATTGActtttccatgaaaaat
gaaaaggaacTTGCCAAGACACTGCTTCAATTTCCAGATATTCTTCAAGT
AACGTTTGACATTGTGTCTAAAGCTGTTGTTAACATtatcaaagtttaaa
aaactgAACTTTTGTTGACTTTCCAACAGATATCTGACATGGTCAGATCA
CCGTTCCATATTCTTCAAGTTTAGCCAATGACATTGTCTGATAATccttt
c Run BLAST on NCBI protein sequence of TCONS_00037724-protein >TCONS_00037724-protein ID=TCONS_00037724-protein|Name=TCONS_00037724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
QSPVKITKIRSDINNNDIVVRDESEVILSQASSSFLPDERLSSKAINSIT
DLFSLAPKQLVRQVKCHVTRVFDVTDHKTRDGKMIDRQEMTVSDKTNSIK
LILYGTDVKSLEEGNSYILKNVRLNIYNDRVYLNSSSERPFQAVKTKKIE
AIDLSASTEVSIMAKIIGISSIHMNFFCIMCNKILHDIDHSDVVCGNQSC
KAQMLLDSCRQGINFTLIFSNIENSERVTLFFSMDKVKQLQNIIDFSMKN
EKELAKTLLQFPDILQVTFDIVSKAVVNIIKV Run BLAST on NCBI transcript from alignment at sc0001696:35164..36114 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037724 ID=TCONS_00037724|Name=TCONS_00037724|organism=Clytia hemisphaerica|type=transcript|length=951bp|location=Sequence derived from alignment at sc0001696:35164..36114 (Clytia hemisphaerica)
gaaaggATTATCAGACAATGTCATTGGCTAAACTTGAAGAATATGGAACG
GTGATCTGACCATGTCAGATATCTGTTGGAAAGTCAACAAAAGTTcagtt
ttttaaactttgataATGTTAACAACAGCTTTAGACACAATGTCAAACGT
TACTTGAAGAATATCTGGAAATTGAAGCAGTGTCTTGGCAAgttcctttt
catttttcatggaaaagTCAATTATGTTCTGAAGTTGTTTGACCTTATCC
ATACTGAAGAATAGAGTAACTCTTTCGCTGTTCTCTATGTTACTGAAAAT
TAGAGTGAAATTAATACCCTGGCGACAACTATCCAGCAGCATTTGAGCCT
TGCATGATTGATTACCACATACAACATCAGAATGATCAATATCATGGAGG
ATTTTGTTGCACATTATACAGAAGAAGTTCATGTGAATGCTACTAATACC
AATTATTTTGGCCATTATGGAAACTTCAGTTGAGGCACTCAAATCAATAG
CCtcaatcttttttgttttgacagCTTGAAAGGGCCTTTCAGATGATGAA
TTTAGGTACACTCTGTCATTATATATGTTGAGTCGAACATTTTTGAGAAT
GTATGAATTGCCTTCTTCTAGAGATTTGACATCAGTACCATACAAGATTA
ACTTGATTGAATTTGTTTTGTCACTTACAGTCATTTCTtgtctgtcaatc
attttcccATCTCTGGTCTTGTGATCTGTAACATCAAAAACTCTGGTAAC
ATGACATTTTACTTGTCTCACTAATTGTTTCGGAGCCAAAGAAAACAAAT
CCGTGATTGAATTGATGGCTTTGGAAGACAGACGTTCATCTGGTAAAAAG
GATGAAGAAGCTTGTGATAAAATGACTTCAGACTCATCTCTAACCACAAT
GTCATTGTTGTTGATGTCTGACCGGATTTTAGTAATTTTGACAGGGGATT
G Coding sequence (CDS) from alignment at sc0001696:35164..36114 >TCONS_00037724 ID=TCONS_00037724|Name=TCONS_00037724|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0001696:35164..36114 (Clytia hemisphaerica)
ttaaactttgataATGTTAACAACAGCTTTAGACACAATGTCAAACGTTA
CTTGAAGAATATCTGGAAATTGAAGCAGTGTCTTGGCAAgttccttttca
tttttcatggaaaagTCAATTATGTTCTGAAGTTGTTTGACCTTATCCAT
ACTGAAGAATAGAGTAACTCTTTCGCTGTTCTCTATGTTACTGAAAATTA
GAGTGAAATTAATACCCTGGCGACAACTATCCAGCAGCATTTGAGCCTTG
CATGATTGATTACCACATACAACATCAGAATGATCAATATCATGGAGGAT
TTTGTTGCACATTATACAGAAGAAGTTCATGTGAATGCTACTAATACCAA
TTATTTTGGCCATTATGGAAACTTCAGTTGAGGCACTCAAATCAATAGCC
tcaatcttttttgttttgacagCTTGAAAGGGCCTTTCAGATGATGAATT
TAGGTACACTCTGTCATTATATATGTTGAGTCGAACATTTTTGAGAATGT
ATGAATTGCCTTCTTCTAGAGATTTGACATCAGTACCATACAAGATTAAC
TTGATTGAATTTGTTTTGTCACTTACAGTCATTTCTtgtctgtcaatcat
tttcccATCTCTGGTCTTGTGATCTGTAACATCAAAAACTCTGGTAACAT
GACATTTTACTTGTCTCACTAATTGTTTCGGAGCCAAAGAAAACAAATCC
GTGATTGAATTGATGGCTTTGGAAGACAGACGTTCATCTGGTAAAAAGGA
TGAAGAAGCTTGTGATAAAATGACTTCAGACTCATCTCTAACCACAATGT
CATTGTTGTTGATGTCTGACCGGATTTTAGTAATTTTGACAGGGGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037724-exon-sc0001696-1491911889:35164..36114 | TCONS_00037724-exon-sc0001696-1491911889:35164..36114 | Clytia hemisphaerica | exon |
| TCONS_00037724-exon-sc0001696-1510915933:35164..36114 | TCONS_00037724-exon-sc0001696-1510915933:35164..36114 | Clytia hemisphaerica | exon |
| TCONS_00037724-exon-sc0001696-1575043694:35164..36114 | TCONS_00037724-exon-sc0001696-1575043694:35164..36114 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001696 | supercontig | sc0001696:35164..36114 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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