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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037709 ID=TCONS_00037709|Name=TCONS_00037709|organism=Clytia hemisphaerica|type=transcript|length=660bp
TTCAGTTACTAGCTTCACTCTGATACAACTACACCGGACGGGTGGAACGG
TCATacaaaatgaagtttttatttttgatgctGATTGCAATGGCGTGGGT
AAATGAAAATCAAGCCACAAGTGACGGGTGCCACGATAGGTACGGCAAAA
CACGGTGCGAGTACTACCAACATATAGGATGGTGTCGGAAACTATCCTCC
ATCAAAAGAAATTGTAGAAACACTTGTGTCTGTTTGGGAGGTGtctcaaa
agttattgattgtcgAAAGTCAGCGTGGGGCTGTTGCAATGATAAGAAAA
CGAAGAAACAAGATGCAATCGGTTTAAATNATGGGGCTGTTGCAATGATA
ACAAAACGAAGAAACAAGATGCAATCGGTTTAAATTGTCcagATTGCACG
GATGATAGTCGATTCACAGTTCTTTGTGATAGATTTGCAAAAGAATGTGC
AGGGAGTGCGCCAATCGTCAAATCGGTGAGAAAGTATTGTCCGAAAACTT
GCAATATTTGCGTGAAAGATAAAACAGATGTTCCAGTGGCATCTATTGTA
CCTTAACTTCAGTAAGAGGACGTGTAACTACTGTAACGGCGGAAGACGCT
CTTCataattaaataaattttgtaaaattttgatatattcaagaacaaaa
ctgaaatttt Run BLAST on NCBI protein sequence of TCONS_00037709-protein >TCONS_00037709-protein ID=TCONS_00037709-protein|Name=TCONS_00037709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MKFLFLMLIAMAWVNENQATSDGCHDRYGKTRCEYYQHIGWCRKLSSIKR
NCRNTCVCLGGVSKVIDCRKSAWGCCNDKKTKKQDAIGLNXGAVAMITKR
RNKMQSV Run BLAST on NCBI transcript from alignment at sc0001693:39382..41655+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037709 ID=TCONS_00037709|Name=TCONS_00037709|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at sc0001693:39382..41655+ (Clytia hemisphaerica)
TTCAGTTACTAGCTTCACTCTGATACAACTACACCGGACGGGTGGAACGG
TCATacaaaatgaagtttttatttttgatgctGATTGCAATGGCGTGGGT
AAATGAAAATCAAGCCACAAGTaagctttttgttttttcaatggTGATTG
CTTTAGTCATTAGATAAATTCTAAAGAACTTGGTACGACTTTGTTGACTA
CAAGTATTTAATCGCAACTTTCTCCCTCCCTTTAGAACCTTGTTCTGACA
AACATGGCGAGCAACATTGTCAAAAATTAGAACGGCTTGGTTTCTGTGAA
ACGCGTGCTgcaataaaagaaacatgtacaAAGACGTGTAGAGCATGTCC
TGGAATGAAGCCAGTTTCACAAACAAAAACTACGCCAAAACcaagtactt
taggcgtacaaactttNGAAAGAAACATGCACAAAGACGTGTAGAGCATG
TCCTGGAATGAAGCCAGTTTCACAAATAAAAACTACGCCAAAACcaagta
ctttaggcgtacaaacttttgcgattttcgcgaaagtaaatgtatttgaa
aattcttgagagGGTAAATCGCGAAAGCttatgctcgcaaaaaaaaatct
gaaaataaaaatttactcaaattttcctctttGACGATAACAAGGATAAA
ATTTAGTGTAAATATTATGCAAAAGTCAATCAAATGTGGTTTGAATACAT
TTGAACGATCAAAACTAGTTTTATATGCACCAGTAACTTGGATTTCTACT
AAAAATATACCTCATTTGCTGATAACTTTCACGATCAGGGTCCAATTTTG
TTCTCTAAaccattttttttcgaaattgacGGAAATATTGTTGTGACTgt
ttttccccggccgtttttTAGTCAAATCcttaaaaaagtcttcaaaaggc
ggacacttcaaTCAACGGACAGTTTTAAATGTCACGGGTCTATGACGTGA
CGTCAGAacacattgcaatggtgcatattataAATAGATATAAAAAGTAC
GTTTCTTTTATAGGTGACGGGTGCCACGATAGGTACGGCAAAACACGGTG
CGAGTACTACCAACATATAGGATGGTGTCGGAAACTATCCTCCATCAAAA
GAAATTGTAGAAACACTTGTGTCTGTTTGGGAGGTGtctcaaaagttatt
gattgtcgAAAGTCAGCGTGGGGCTGTTGCAATGATAAGAAAACGAAGAA
ACAAGATGCAATCGGTTTAAATNATGGGGCTGTTGCAATGATAACAAAAC
GAAGAAACAAGATGCAATCGGTTTAAATTGTCcaggtaccttatcgggga
aaaaatatCCTGATATtcatcacccgaccaaaactttcccccgaccaaaa
catttacTATGTATTTTATACCCTAGCCGAAAATTCAAATtcacgttttt
acgtcttttttAACGAAACTAGCCGTCGGCAATTTTATCGGGTTgcagtg
actaaattgtaaatttggtagTACAAGCCacgaacttgaaattttggtcg
gggcgAATCGTCTCCCCGTTAGCTTTTCCCTAACTAATTAAAACCTCAAC
TTTTCCCCTAAATATATTATTCAGTGTACCCAAGAGCCTGATTTTGTGGT
TGTTAAGAAGTATACGGTgattcaacgtccatctaatgttcacaacgtcc
atacaaCATTAAATGAATGTTGgagacaacgttgtgtgtcagttGAGCAG
TAATAAAGTGCCCCTCCCGTTCATTGAAAATCTTTCAAGAGCCTCCACAG
CGAGGCTGTGTTTTATGCAACTGACGGTTAGTTTGATTTGTCTGAATCCT
GACTGGCTAAGTAAGGACGACATTAAATCGACACTTTTACTGTCTTCAAT
TTTGCAGGTCGTTTGTTTTTCCCAATCATTTCTGTCACTGGCCTTCCTCA
AAAGGACAGATACATAAACCTCACTATTAGGCAGCTCAGAATACCTGTAA
CTAGTTATAAAATAAGTGCACTGAGGTAATATTTTCTTACCTCTTTTTTT
ATTCAGATTGCACGGATGATAGTCGATTCACAGTTCTTTGTGATAGATTT
GCAAAAGAATGTGCAGGGAGTGCGCCAATCGTCAAATCGGTGAGAAAGTA
TTGTCCGAAAACTTGCAATATTTGCGTGAAAGATAAAACAGATGTTCCAG
TGGCATCTATTGTACCTTAACTTCAGTAAGAGGACGTGTAACTACTGTAA
CGGCGGAAGACGCTCTTCataattaaataaattttgtaaaattttgatat
attcaagaacaaaactgaaatttt Coding sequence (CDS) from alignment at sc0001693:39382..41655+ >TCONS_00037709 ID=TCONS_00037709|Name=TCONS_00037709|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0001693:39382..41655+ (Clytia hemisphaerica)
atgaagtttttatttttgatgctGATTGCAATGGCGTGGGTAAATGAAAA
TCAAGCCACAAGTGACGGGTGCCACGATAGGTACGGCAAAACACGGTGCG
AGTACTACCAACATATAGGATGGTGTCGGAAACTATCCTCCATCAAAAGA
AATTGTAGAAACACTTGTGTCTGTTTGGGAGGTGtctcaaaagttattga
ttgtcgAAAGTCAGCGTGGGGCTGTTGCAATGATAAGAAAACGAAGAAAC
AAGATGCAATCGGTTTAAATNATGGGGCTGTTGCAATGATAACAAAACGA
AGAAACAAGATGCAATCGGTTTAAatgaagtttttatttttgatgctGAT
TGCAATGGCGTGGGTAAATGAAAATCAAGCCACAAGTGACGGGTGCCACG
ATAGGTACGGCAAAACACGGTGCGAGTACTACCAACATATAGGATGGTGT
CGGAAACTATCCTCCATCAAAAGAAATTGTAGAAACACTTGTGTCTGTTT
GGGAGGTGtctcaaaagttattgattgtcgAAAGTCAGCGTGGGGCTGTT
GCAATGATAAGAAAACGAAGAAACAAGATGCAATCGGTTTAAATNATGGG
GCTGTTGCAATGATAACAAAACGAAGAAACAAGATGCAATCGGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037709-exon-sc0001693-1491911889:39382..39501 | TCONS_00037709-exon-sc0001693-1491911889:39382..39501 | Clytia hemisphaerica | exon |
| TCONS_00037709-exon-sc0001693-1510915933:39382..39501 | TCONS_00037709-exon-sc0001693-1510915933:39382..39501 | Clytia hemisphaerica | exon |
| TCONS_00037709-exon-sc0001693-1575043694:39382..39501 | TCONS_00037709-exon-sc0001693-1575043694:39382..39501 | Clytia hemisphaerica | exon |
| TCONS_00037709-exon-sc0001693-1491911889:40395..40666 | TCONS_00037709-exon-sc0001693-1491911889:40395..40666 | Clytia hemisphaerica | exon |
| TCONS_00037709-exon-sc0001693-1510915933:40395..40666 | TCONS_00037709-exon-sc0001693-1510915933:40395..40666 | Clytia hemisphaerica | exon |
| TCONS_00037709-exon-sc0001693-1575043694:40395..40666 | TCONS_00037709-exon-sc0001693-1575043694:40395..40666 | Clytia hemisphaerica | exon |
| TCONS_00037709-exon-sc0001693-1491911889:41388..41655 | TCONS_00037709-exon-sc0001693-1491911889:41388..41655 | Clytia hemisphaerica | exon |
| TCONS_00037709-exon-sc0001693-1510915933:41388..41655 | TCONS_00037709-exon-sc0001693-1510915933:41388..41655 | Clytia hemisphaerica | exon |
| TCONS_00037709-exon-sc0001693-1575043694:41388..41655 | TCONS_00037709-exon-sc0001693-1575043694:41388..41655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001693 | supercontig | sc0001693:39382..41655 + |
Blast
The following BLAST results are available for this feature:
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