TCONS_00037706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037706
Unique NameTCONS_00037706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037706 ID=TCONS_00037706|Name=TCONS_00037706|organism=Clytia hemisphaerica|type=transcript|length=251bp
TGAAAATTTAGTTACTAGTTACACTCTGATACAGGTTGGGTTACACAGGA
CAGGTGGAACGGCCATACAAAATGAAGCTTTTAATTTTGATACTGATTGC
AATGACATGTGTAAATGAAAATCAAGCCATAAATTGCGCGGATGATAGCC
ACTTCAAAGTTCTTTGTGATAGATTTGGGCCAAATCAATGTACAGGGAAT
GCACCAATCGTCAAATCGATGAGAAAGTATTGTCCAAAAACTTGCAATAT
N
Run BLAST on NCBI

transcript from alignment at sc0001693:35627..36624+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037706 ID=TCONS_00037706|Name=TCONS_00037706|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at sc0001693:35627..36624+ (Clytia hemisphaerica)
TGAAAATTTAGTTACTAGTTACACTCTGATACAGGTTGGGTTACACAGGA
CAGGTGGAACGGCCATACAAAATGAAGCTTTTAATTTTGATACTGATTGC
AATGACATGTGTAAATGAAAATCAAGCCATAAGTAAGCTTTTTGTTAATA
ACTTTACGATGGACATATACTAGGTATCAGGTCGGTGTCTGATTtcgtgc
tgaataaacaaaaaattgttttctttttctctctctgaccaatcttgctc
cacatccgtgtcaattcaatgtgcaAAAGCTTGTAggttaaaattgatga
gtaagcaaacgatatcggtcttatctaaaaacaaaacctttaaattgtCA
CAATGTTTTTTGACAACAAAAATCTTGAATGAATCGGATCAAATTTGACC
CTTATAATCCACATTCAAAGGAAGAGAAACAACTTGTATGTCAGCTGAGC
AGTAATAAGGTGCCCCTCCCGCAACCTtgttccctgcgcattatcagctt
cTTTATGCTTTACTATATGACGCTagagggtattctctggcgtcaataag
taacgtaaataaagcctaggATACACAGGGACGaggtagccccccccccc
cctttattgaAAATCTTTCAAGAGCCTCCATAGCAAGGCTGTGTTATATG
CGACTGACGGTTAGTTTGATTTGTCTGAATCCTGACTGGCTAAGGACGAC
GATAAATCAACACTTCTACCGTTCTCAATTTTGCAGGTCAGAACAGTTTC
GTTTCCGTCACTCCGCCGCCCTCAAAAGGGCAGATACATAAACCTCACTA
TTAGGCAGCTCAGAGTACCTGTAACTAGTTATGAAATAAGTGCACGGAGG
TAATATTTTCTTGCCTCTTTTTTATTCAGATTGCGCGGATGATAGCCACT
TCAAAGTTCTTTGTGATAGATTTGGGCCAAATCAATGTACAGGGAATGCA
CCAATCGTCAAATCGATGAGAAAGTATTGTCCAAAAACTTGCAATATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022442XLOC_022442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037706-exon-sc0001693-1491911889:35627..35758TCONS_00037706-exon-sc0001693-1491911889:35627..35758Clytia hemisphaericaexon
TCONS_00037706-exon-sc0001693-1510915933:35627..35758TCONS_00037706-exon-sc0001693-1510915933:35627..35758Clytia hemisphaericaexon
TCONS_00037706-exon-sc0001693-1575043694:35627..35758TCONS_00037706-exon-sc0001693-1575043694:35627..35758Clytia hemisphaericaexon
TCONS_00037706-exon-sc0001693-1491911889:36506..36624TCONS_00037706-exon-sc0001693-1491911889:36506..36624Clytia hemisphaericaexon
TCONS_00037706-exon-sc0001693-1510915933:36506..36624TCONS_00037706-exon-sc0001693-1510915933:36506..36624Clytia hemisphaericaexon
TCONS_00037706-exon-sc0001693-1575043694:36506..36624TCONS_00037706-exon-sc0001693-1575043694:36506..36624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001693supercontigsc0001693:35627..36624 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754611	0	0	0	0	0	0.970172	0	0	1.57532	2.85564	0.502567	20.1002	15.6391	0.428493	1.37952	0	0	389.144	479.536	0.729601	1.06762	1.73044	0.786613	0.810192	1.44615	0	0	1.48349	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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