TCONS_00037696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037696
Unique NameTCONS_00037696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1017

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037696 ID=TCONS_00037696|Name=TCONS_00037696|organism=Clytia hemisphaerica|type=transcript|length=1017bp
ATTATTGCACTTATTTTCATTATTCCTTCCAGAATTGtatgaaataataa
aatgacATCAAGTAACCAGGAAGCAATAGACAGTTTGACTGAACGAGTTA
ACAGATTGTACAATCAAGTATTTACCATTCCACAACCAGCTGATTCCATT
AAAAAGCCTTGTGACATTATTGACGAGACAAGATGCATATTCGAACAGGT
TGAGAAGAAAAATAGTGTTGTAAAACAGCTATGGAAAACATTACCTCAAC
TTGAAGAATTTTTATCAACAGAGTTTATGAACAAAATCGGTCTCACTGAC
GAGGTTAAGACTACACTCGTTCTAGCCAgTGAAGATAATTTGAGGATTTT
ATCCACACAACTGGAAGAATTGAAGACACTTCAAAATATTCCTAATGCAT
CTTCACTTCAAGgAGTTCCcgataattcaaagaaattgcAGCCTATAATT
CAAGGCCAAATGGACCAAAAGgaaGACTTAGAAGAAGTAAATGGACGGCT
ACAATTACTTTTATGTGCATACAATGATATTATCTCAACATTATCCAAAC
AATTCGTCATATGGAATAACCTGGTAACGCAATGTGAACTGAAATACGAT
TCTGATCGCTCTGCTATCGAATGAATGAATTACAGAAAAATATTACTGTT
GACTATTTTACTACTGCTTCGAGAACTAAAGTATGAAATAACTTAAAAGG
ACATTTTGATGGATAGTTGATATATGAGCTTGTaccattgggctcttcca
gaaaaaaattgaatatggggggtggaggatataacattttttgtccCCCT
GGACATTATGAATTTTGACCTCCCCCCGGACGGATCtcaccccccggaca
agcatcagttgaccccccggacattcaaaatcacccctaatcagAGCAAG
TTTGCCCCAAAATAAGGcgaattttgcagatttttcactactccctggac
aaaaattttctggaagagcccatttttgATGGATAGGTAATATGAACTTG
TGCCATTAGATGAATTA
Run BLAST on NCBI

transcript from alignment at sc0001689:31861..35169-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037696 ID=TCONS_00037696|Name=TCONS_00037696|organism=Clytia hemisphaerica|type=transcript|length=3309bp|location=Sequence derived from alignment at sc0001689:31861..35169- (Clytia hemisphaerica)
ATTATTGCACTTATTTTCATTATTCCTTCCAGAATTGTATGAAATAATAA
AATGACATCAAGTAACCAGGAAGCAATAGACAGTTTGACTGAACGAGTTA
ACAGATTGTACAATCAAGTATTTACCATTCCACAACCAGCTGATTCCATT
AAAAAGGTATATAAATAATTCTAACTTGTCATTTCAACTGCTTGACCGTA
CTCGTCAAGACCAAATACATATTCAAAAGGTTATGCTAGTATATGAAATT
CATAACCTTTTTTGAATTCTTTTTTTCTGTTTACAGCCTTGTGACATTAT
TGACGAGACAAGATGCATATTCGAACAGGTTGAGAAGAAAAATAGTGTTG
TAAAACAGCTATGGAAAACATGTAAGAGATGAGATATGTGAAAAAATATG
TATGAGCAGGAAAACTGAATGACAGAGGGTACCAATGTCAAACAGTGTTA
GAGAATGTGATATACCTATAAGACTTCTGACAACTGAAGACATTGTACAT
ACTATTAATCGCAGTATTCTTTTGTATCTTTCAGTACCTCAACTTGAAGA
ATTTTTATCAACAGAGTTTATGAACAAAATCGGTCTCACCGATGAGGTTA
AGACTACACTCGTTTTAGCCAGTAAGTTGATGTAATATAATATAGGTTAT
TTTAGAAATTTATAATTTCTTGTTATTTTATCACAACAATTTCAAAACAG
TAAAAACAAATTCAAAGATTTCGTGGTGCTTTTTGAGGTCTGTTCAATTC
TTTGAACCACGTTTTGCAAACTGTCAATAAAATGAAAATATTTTATCTCT
TTTTAGGTGAAGATAATTTGAGGATTTTATCCACACAACTNTCAACTTGA
AGAATTTTTATCAACAGAGTTTATGAACAAAATCGGTCTTTTGTATCTTT
CAGTACCTCAGCTTGAAGAATTTTTATCAACAGAGTTTATGAACAAAATC
GGTCTTTTGTATCTTTCAGTACCTCAACTTGAAGAATTTTTATCAACAGA
GTTTATGAACAAAATCGGTCTTTTGTATCTTTCAGTACCTCAGCTTGAAG
AATTTTTATCAACAGAGTTTATGAACAAAATCGGTCTTTTGTATCTTTCA
GTACCTCAACTTGAAGAATTTTTATCAACAGAGTTTATGAACAAAATCGG
TCTTTTGTATCTTTCAGTACCTCAGCTTGAAGAATTTTTATCAACAGAGT
TTATGAACAAAATCGGTCTTTTGTATCTTTCAGTACCTCAACTTGAAGAA
TTTTTATCAACAGAGTTTATGAACAAAATCGGTCTTTTGTATCTTTCAGT
ACCTCAGCTTGAAGAATTTTTATCAACAGAGTTTATGAACAAAATCGGTC
TTTTGTATCTTTCAGTACCTCAACTTGAAGAATTTTTATCAACAGAGTTT
ATGAACAAAATCGGTCTTTTGTATCTTTCAGTACCTCAGCTTGAAGAATT
TTTATCAACAGAGTTTATGAACAAAATCGGTCTTTTGTATCTTTCAGTAC
CTCAACTTGAAGAATTTTTATCAACAGAGTTTATGAACAAAATCGGTCTC
ACTGACGAGGTTAAGACTACACTCGTTCTAGCCAGTAAGTTGATGTAATA
TAATATAGGTTATTTTAGAAATTTATAATTTCTTGTTATATCACAAGTAT
TTCAAAACAGTAAAAAGATTTTGTGGTGTTTTCGAGGTCTGTTCAATTCT
TTGAACCTCGTTTTGCAAACTGTCAATAAAGTAATGTGGAAATGAAAATA
TTTTAACTGTTTTTAGGTGAAGATAATTTGAGGATTTTATCCACACAACT
GGAAGAATTGAAGACACTTCAAAATATTCCTAATGCATCTTCACTTCAAG
GTTTGTTTAAGATACACAGTCCAAATAAGCTATTTTATTGCAGATTTAAT
CTTATCATAAATGTCTATTAAAAGCTCTATGGGGGATGGTGTCAATTGCA
TTGGTGTCTCAAATGACAACAAATTCACATTCTTTTATTTTATTTTAACA
GGAGTTCCCGATAATTCAAAGAAATTGCAGCCTATAATTCAAGGCCAAAT
GGACCAAAAGGTATAAAAAACTCGACATCCAATTAGAAATTTAATTTATG
TAAACTTGGCTAATACACCTAGTACACTGTGTAATCAGTACACCCAAATG
GGATGATTAAAATCTTTGCGCTGGGGTTCTTTTCCAATTGATCGTACTTC
AACATTATTTAGAAATAGACAGTGATTTCAGCATTTAGAGATAAGCGTAT
CTCCTGGTTTGGTTTGAGTAGGTTCTTAAAATGTTATACATTTATTTCTT
GTTCTGTGCGTCAGACACTATATCAAATGTAGGGAGTAAAGAAGGTGAAA
ATTGAATTCGCTCTTTGTTGACTTGACAACATATATGTTATTATTTGCTT
ATAGTTATTTAAACTTATTCTTTTATTTTTAGGAAGACTTAGAAGAAGTA
AATGGACGGCTACAATTACTTTTATGTGCATACAATGATATTGTATCCTT
TTCTTTTAATATTCCTACAAAAGAATATTGCACAAAATGATTAGTACTAA
CTGTGTAGTACTCAGGTGACATTGTTCAGTCAAGTGTCCAGGGAAGGAAC
TTCCTCTAGTATTTGGTTTGTTTACGTTCCCACAAAAAAGATCTTATGAG
AGAAAGTTCTATAATAAATTTGGCTCTCCAGAGGTTTTTACGATAATGAG
TATACTCATACATCCCATGTTTTATACGTCTGATGTTAAGACAGATGTTG
TTTGAAAACAAATTGAAAGCCAATTTCCCTCATACTATTTTGCCTTGACT
TCTTTCTCCACTAACATCTTTAGATCTCAACATTATCCAAACAATTCGTC
ATATGGAATAACCTGGTAACGCAATGTGAACTGAAATACGATTCTGATCG
CTCTGCTATCGAATGAATGAATTACAGAAAAATATTACTGTTGACTATTT
TACTACTGCTTCGAGAACTAAAGTATGAAATAACTTAAAAGGACATTTTG
ATGGATAGTTGATATATGAGCTTGTACCATTGGGCTCTTCCAGAAAAAAA
TTGAATATGGGGGGTGGAGGATATAACATTTTTTGTCCCCCTGGACATTA
TGAATTTTGACCTCCCCCCGGACGGATCTCACCCCCCGGACAAGCATCAG
TTGACCCCCCGGACATTCAAAATCACCCCTAATCAGAGCAAGTTTGCCCC
AAAATAAGGCGAATTTTGCAGATTTTTCACTACTCCCTGGACAAAAATTT
TCTGGAAGAGCCCATTTTTGATGGATAGGTAATATGAACTTGTGCCATTA
GATGAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022434XLOC_022434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037696-exon-sc0001689-1575043694:35014..35169TCONS_00037696-exon-sc0001689-1575043694:35014..35169Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1575043694:34799..34883TCONS_00037696-exon-sc0001689-1575043694:34799..34883Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1575043694:33586..33672TCONS_00037696-exon-sc0001689-1575043694:33586..33672Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1575043694:33320..33403TCONS_00037696-exon-sc0001689-1575043694:33320..33403Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1575043694:33110..33168TCONS_00037696-exon-sc0001689-1575043694:33110..33168Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1575043694:32678..32737TCONS_00037696-exon-sc0001689-1575043694:32678..32737Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1575043694:31861..32346TCONS_00037696-exon-sc0001689-1575043694:31861..32346Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1510915933:35014..35169TCONS_00037696-exon-sc0001689-1510915933:35014..35169Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1510915933:34799..34883TCONS_00037696-exon-sc0001689-1510915933:34799..34883Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1510915933:33586..33672TCONS_00037696-exon-sc0001689-1510915933:33586..33672Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1510915933:33320..33403TCONS_00037696-exon-sc0001689-1510915933:33320..33403Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1510915933:33110..33168TCONS_00037696-exon-sc0001689-1510915933:33110..33168Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1510915933:32678..32737TCONS_00037696-exon-sc0001689-1510915933:32678..32737Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1510915933:31861..32346TCONS_00037696-exon-sc0001689-1510915933:31861..32346Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1491911889:35014..35169TCONS_00037696-exon-sc0001689-1491911889:35014..35169Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1491911889:34799..34883TCONS_00037696-exon-sc0001689-1491911889:34799..34883Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1491911889:33586..33672TCONS_00037696-exon-sc0001689-1491911889:33586..33672Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1491911889:33320..33403TCONS_00037696-exon-sc0001689-1491911889:33320..33403Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1491911889:33110..33168TCONS_00037696-exon-sc0001689-1491911889:33110..33168Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1491911889:32678..32737TCONS_00037696-exon-sc0001689-1491911889:32678..32737Clytia hemisphaericaexon
TCONS_00037696-exon-sc0001689-1491911889:31861..32346TCONS_00037696-exon-sc0001689-1491911889:31861..32346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001689supercontigsc0001689:31861..35169 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.8666	29.6578	10.5148	5.40036	38.149	26.4609	29.494	28.4704	52.501	43.0899	33.7656	31.2109	22.8772	19.0653	13.3465	15.0104	24.3278	25.0846	11.5304	19.0867	17.8615	19.5551	21.8233	21.9884	16.2105	23.8627	14.7503	19.8329	21.6479	16.2414
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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