TCONS_00037687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037687
Unique NameTCONS_00037687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037687 ID=TCONS_00037687|Name=TCONS_00037687|organism=Clytia hemisphaerica|type=transcript|length=684bp
gtagcgttgacttttattagcctttgttgctacctgttcgtcaacttgaa
ataaactattacatacatacatacatacatacaaatTCATATAGATGAAA
AAAGAAACCCCGATAGATTGGCAACCAATTTGGAAGTGAACAAAAAGCTT
GACACTGTAGAATGATATTCCATAGCCGATCATCTTGAAGCCCTTGCAAT
ATTTTAATGTCACGATAACCCCTAAATAAATAGACCAATGTTTGTTTGAC
AGTGTCGTCCCCCCTCACTGCTTCGTTATAAAGCcgcttcaagaattttt
ttctgcCACGATATCCATTCGAGAAGTATCTGCTGCGAAAAAGATTCCTT
TCAAAATGATTGACATTGAAGTTCGGTCGCCATTGAACAAAAAAACCATC
CTTAGAAAGATATACATGGATGGCGAAGCAACCTTCGTTCCGTGTCAAAG
GTTCCAAACGATACAAGAGGTCATCCAGAAAATCCAAACTAATACCATCA
GCAATAATGgttatattatttatttgtGTGCAAGCTAACATTCCAAATTC
TTCAAACTGGAACCCATCAGCTTTGCAATGGGATATCAATATGAAGAGAA
AACAAGTCACCAAAAAGGAGATACGAACCATTTTGTAAATACTCGAAAAG
AATTTCTGTTGTTGTGAAAAAGAGTGAGCATATG
Run BLAST on NCBI

transcript from alignment at sc0001688:28131..28814+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037687 ID=TCONS_00037687|Name=TCONS_00037687|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at sc0001688:28131..28814+ (Clytia hemisphaerica)
gtagcgttgacttttattagcctttgttgctacctgttcgtcaacttgaa
ataaactattacatacatacatacatacatacaaatTCATATAGATGAAA
AAAGAAACCCCGATAGATTGGCAACCAATTTGGAAGTGAACAAAAAGCTT
GACACTGTAGAATGATATTCCATAGCCGATCATCTTGAAGCCCTTGCAAT
ATTTTAATGTCACGATAACCCCTAAATAAATAGACCAATGTTTGTTTGAC
AGTGTCGTCCCCCCTCACTGCTTCGTTATAAAGCcgcttcaagaattttt
ttctgcCACGATATCCATTCGAGAAGTATCTGCTGCGAAAAAGATTCCTT
TCAAAATGATTGACATTGAAGTTCGGTCGCCATTGAACAAAAAAACCATC
CTTAGAAAGATATACATGGATGGCGAAGCAACCTTCGTTCCGTGTCAAAG
GTTCCAAACGATACAAGAGGTCATCCAGAAAATCCAAACTAATACCATCA
GCAATAATGgttatattatttatttgtGTGCAAGCTAACATTCCAAATTC
TTCAAACTGGAACCCATCAGCTTTGCAATGGGATATCAATATGAAGAGAA
AACAAGTCACCAAAAAGGAGATACGAACCATTTTGTAAATACTCGAAAAG
AATTTCTGTTGTTGTGAAAAAGAGTGAGCATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022429XLOC_022429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037687-exon-sc0001688-1491911889:28131..28814TCONS_00037687-exon-sc0001688-1491911889:28131..28814Clytia hemisphaericaexon
TCONS_00037687-exon-sc0001688-1510915933:28131..28814TCONS_00037687-exon-sc0001688-1510915933:28131..28814Clytia hemisphaericaexon
TCONS_00037687-exon-sc0001688-1575043694:28131..28814TCONS_00037687-exon-sc0001688-1575043694:28131..28814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001688supercontigsc0001688:28131..28814 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.498022	0.28956	1.00877	0.687064	0.941358	0.380599	0.43169	0.380177	0.585629	0.420659	0	0.51093	4.16201	3.75951	1.38174	2.17481	0.961725	0.859784	0.576774	0.657618	0.228505	0.303124	0.0969946	0.114295	1.22847	1.09484	0.12825	0	0.652164	0.268322
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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