TCONS_00037677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037677
Unique NameTCONS_00037677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037677 ID=TCONS_00037677|Name=TCONS_00037677|organism=Clytia hemisphaerica|type=transcript|length=309bp
ATGCCCATCAGATAACGTTCTTTTAAGATACCTACATGCAGTTACTGGAT
CCGGGTGCTTCATTTTATGCGTAAACAACATGGCGACTGCACGCTTACAG
AAAGATGTCTTCATTAGTGTTTATTTTCAAGCTATGTGGAAACAGATCAA
AGGCACTATCAACCCTATTCTCAATGGTAACAGTAAACGTAAGAGAAGAG
TAATGGAAATGTTGAAGAAAGAACAGAAGGAGAAAATAGGATCAATGGTA
GAAGaattaaaaagcattgatgaaattttcaaacaaattggAGAACAGTT
ATCTTCTCG
Run BLAST on NCBI

protein sequence of TCONS_00037677-protein

>TCONS_00037677-protein ID=TCONS_00037677-protein|Name=TCONS_00037677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
CPSDNVLLRYLHAVTGSGCFILCVNNMATARLQKDVFISVYFQAMWKQIK
GTINPILNGNSKRKRRVMEMLKKEQKEKIGSMVEELKSIDEIFKQIGEQL
SS
Run BLAST on NCBI

transcript from alignment at sc0001687:1485..5405-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037677 ID=TCONS_00037677|Name=TCONS_00037677|organism=Clytia hemisphaerica|type=transcript|length=3921bp|location=Sequence derived from alignment at sc0001687:1485..5405- (Clytia hemisphaerica)
ATGCCCATCAGATAACGTTCTTTTAAGATACCTACATGCAGTTACTGGAT
CCGGGTGCTTCATTTTATGCGTAAACAACATGGCGACTGCACGCTTACAG
AAAGATGTCTTCATTAGTGTTTATTTTCAAGGTTTGTCACTCAGTTTCTT
CTCTAATTTATTATAAAGTTGATGGATTTGAACAACCATTTTCATCTTTT
ATTAGCACTCATGCAAAATACTCTCTCTCTCTTTCTGTTGACAACCTTTT
TCCACACATTCACCTTTATGATGGGTATTAAATATCCAACCAACAAATCA
AATGTTATTACAAATTGGTAATTAATTATTATATATATATAGGACCTTGA
TTACCTATTAGCTGTTTGATAATCCATTGATTGGCCGTTCCAGACTTTCC
TTGTGATCTTTTCCCAATTAAAAATTATACGAAACTAATCAAATAAATTT
GATATCCATATTGATTTACGTGTCAGTGAATAACCCAGGGAATTTCCTAT
CAAAGGCATTTATGAATTAGTACAGATGTGTACACTAGACAGCTAGATAT
TTTCTTGTCAATGTTTTTAAAGCAGTCAAACCTTGGTCAAACCAGGCTCT
CCCACTCGATAAACATTAGCTACAATCGATACATTTTTTCATCGATAACG
ATGACCAATCGATGGATGGGATATTTACAATAATGGATAGGTAAGCAAGC
CTATTCTAAAATCTTGAATATCTATTGATCATCAATTGACTTAACGATCG
ATCGAACATGAAATGGTTTGACAATCAATCATCTTAATTAGCCTTAATTA
ATGATTATCGATTATACCTATCCACCCGTCTATGTAAGTCGTAGCGGATC
ATCATCTATGTACTCTTTTTAAAGGATAGACAGGACGTTCATTCGACTAC
GCTATAGCTCTGAATATTTAATGACAAACGTAGCGGATGCTCGTTCTTTT
AACACCAACATTGAGTTCCTGGACATTGGTGACTCAGTTTCAGGCAGGAA
AAACTTTACTTTCAAGGTTTGTCTTTTATAAACTTATATGCAATAAAATC
ATAACTTAAAATATGGATTGGAATAATTTTTTTCATCTTTTCACCTTCCG
ATGGGTATGNATACTTTATAGTCTATTGAATACCGTGAGATCGGGTAGCT
TGCATCAGTGGAGGCTAACATGCATAGCCCTTAAATGAATGACATGGCTG
GTAAGTTAAATCAAAACAGAAATGGTAGAGTAGAGCTGCGAGCGGAGCTG
CGTATTTCATTTGTTTTGAAATTTTAATGACCAGCCAGGTCATTCATTTC
AGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCTGATCTCACGGT
AACAAATTACTACAGTATTATAATTACTTGCCCTCAGCCATAGTATACGT
ATACAGTACAAGTGGGATAAATTATTTTGTCTCTTGGTAACAGCTCTGTT
GTAAAGAAAAATCAATTAGTTGACTTTTTTAATAAAAAATTTATGCTGTG
GTAATTTGTCATTGTAAATAGACCGCCATGATATCGTGTAAACAACTATA
TATTGTCGTTTTAGCGAATGCGACAGTCTGAATAACAAATTACTACAACA
TACATCACTTGCTGTCAGCCAGTATTGGCCAGTACAAGACAAGGAGGATG
AATTATTTTGTCTGTAGGTAACAACTGTGTTGTAAAAGAATAATTGAATT
AGATGGCGTTATCAAATAAGAAATTTATTAATTAGTTTAATTAATTTAAT
TTAATTAGTTCAATATTAGACTGATGTGATTGCCAAAACGACTATAACAT
AAACTTTACAAGAATTTTTCTATATTATCTATATTTTTTGTTGAGTCAAA
ATTGAATCAGGGTGTGAGCTAAAAAAATTATAATTGCAGTGAAATTAAAT
TAATCCTCAAAATATATTTCGAAACTGGCGGAAGAAATTTTCTTCCCAAA
ATGTGAAAGTCAGCTATTTTCTAAAAACGGTCAGCTATAATTTTAAAGGC
CAGTCTCTCTCTCAACTCAGGCACAAATAAAATAAGCAATTAGCAATTGT
ATGTTCACATCAGTCTTACTGCCGATATATAAATGGAATTGTAAATACTC
CAAAATTAAGTTCATAAAACTCAATTTGAAAAAGCTTCTTTTGTCTAAAT
TTTTAATCATTCAAAAAGGAGAAAGTAGGCCTATTTTGACCATAATTTAG
CTGATTTTATCTTAATTGTACAAACCTTTGGAGCTCCCCTCAATAACTCC
ACCAGGCTTTCATCTATTTTCCCAACTTTAAGGCTCAAGAGAAACTCAAT
CTAGATATACAAAATGGCCCCAGCTAAAAGTGCTTAGAAAAATCCCTGAT
AGTATATATAATTTTGTATTACTAGATTGATAATTTTTTTGATTAAAAAC
AGTTGATTTTACTTTTTTGTTCATTAATTTGCAACTGGTTTATCTATAAT
TTTGTATATAGAACCTGACCTGCTTTACCAAATGAATCAATGATAATAAT
AATCAGAATTTTTATTAGTCCTGGAAAAAGATTAGCACAAAAGTAGCCTG
ACTTTTACTTTTCAACATAGAATGTTGAACAAGTGAGTGTTGAACAACAA
GCAGCTAAACAAATGGATGTTGAACATTTTTCATTTGTTTACTTGAATTT
CCATTTTAACAGTATTTAATCCATTTAGTTTTGTTAATTTAATATCTAAT
TTAATTTTTACATAAATTATTTTTGGTTGAGCACCACCTTTTTCATTCCG
ACAGATACCTTCAAAGAGTCAACATCAACTTTCTACACTTACATTTTTTA
TGGTCTCACATTCTAGCATTTTATGCTCAGTCCATTTCTCAAACAAGGTC
GTAGCTCACATGCACCTTATATTTGTATTTGCTGCCAGATCATAGCCTTC
ATACTCAGGCCAGCTGATGGGTCTTTCTTTGCTTTTGCTTTGCTTGTTTT
CATAGTGTTTTTGCTTTGCATTTGTTTTCATAGTGGTTCTTAAGTTAGGA
TCGTTTTTCATTTCTTATTTTTTTAGCATTTATTCATTATTCTTAAACAC
TCACATAGAACTCTGTCATTCAAACTTTTACTTAAAACTTTATATATACT
ATTTTTATTTTGAACCTTGTTCAACAATAAATGAATGCACTTGACAGTGT
TGCAAACATGGCTATCACCCTACGACTCAATGTCTGATCATCTCTGTCCC
CACAAATTGAATACAGTCATTTTTAAGTTTTGAACTCGAACTATGCCATT
TGCGTACAGAGATTATTGTAAATGGGTTTTGAGTTTGAGTGCTGTTTTAT
TTGTCTAAAGAAATGAAGTGAAGCCATAAGTAGTTACCCGAATAACATTT
TAAGCTTTGTATGACTCTTTTTGTTTTTCATTATCTTTTTAAACTTCAGA
AAATTATATAATATAAGGTTTAGTCTGGTAAGCAACAAACTACGATTGAA
TGATAAGGGTACCAATGAAAGCTGAGAGAAGCTAAAGTTAGTTTCGAGTT
CATCCCTAAATCTAAAAAAAGTCTGAAGCCGGTCACTGAATCTAAATTAG
TCTGTATTGTTATGTTCTTTTTCAGCTATGTGGAAACAGATCAAAGGCAC
TATCAACCCTATTCTCAATGGTAACAGTAAACGTAAGAGAAGAGTAATGG
AAATGTTGAAGAAAGAACAGAAGGTATTTATTACAAATAGTGATTGTATT
CCTTTATGATATCGTCTGTTAGTAGTATACTTCGTAGTACAGACAGTTCG
AGACAATTGTTTGCTTAGGAAAACACTACAGAAAGAGCTAAATGTAGTTT
TGATTTTAAGATTTCTTTTCTTGCTTTTCCAAATAATTCAGGAGAAAATA
GGATCAATGGTAGAAGAATTAAAAAGCATTGATGAAATTTTCAAACAAAT
TGGAGAACAGTTATCTTCTCG

Coding sequence (CDS) from alignment at sc0001687:1485..5405-

>TCONS_00037677 ID=TCONS_00037677|Name=TCONS_00037677|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0001687:1485..5405- (Clytia hemisphaerica)
GAGAAAATAGGATCAATGGTAGAAGAATTAAAAAGCATTGATGAAATTTT
CAAACAAATTGGAGAACAGTTATCTTCTCTATGTGGAAACAGATCAAAGG
CACTATCAACCCTATTCTCAATGGTAACAGTAAACGTAAGAGAAGAGTAA
TGGAAATGTTGAAGAAAGAACAGAAGTGCCCATCAGATAACGTTCTTTTA
AGATACCTACATGCAGTTACTGGATCCGGGTGCTTCATTTTATGCGTAAA
CAACATGGCGACTGCACGCTTACAGAAAGATGTCTTCATTAGTGTTTATT
TTCAAGGAGAAAATAGGATCAATGGTAGAAGAATTAAAAAGCATTGATGA
AATTTTCAAACAAATTGGAGAACAGTTATCTTCTCTATGTGGAAACAGAT
CAAAGGCACTATCAACCCTATTCTCAATGGTAACAGTAAACGTAAGAGAA
GAGTAATGGAAATGTTGAAGAAAGAACAGAAGTGCCCATCAGATAACGTT
CTTTTAAGATACCTACATGCAGTTACTGGATCCGGGTGCTTCATTTTATG
CGTAAACAACATGGCGACTGCACGCTTACAGAAAGATGTCTTCATTAGTG
TTTATTTTCAAGGAGAAAATAGGATCAATGGTAGAAGAATTAAAAAGCAT
TGATGAAATTTTCAAACAAATTGGAGAACAGTTATCTTCTCTATGTGGAA
ACAGATCAAAGGCACTATCAACCCTATTCTCAATGGTAACAGTAAACGTA
AGAGAAGAGTAATGGAAATGTTGAAGAAAGAACAGAAGTGCCCATCAGAT
AACGTTCTTTTAAGATACCTACATGCAGTTACTGGATCCGGGTGCTTCAT
TTTATGCGTAAACAACATGGCGACTGCACGCTTACAGAAAGATGTCTTCA
TTAGTGTTTATTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022421XLOC_022421Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037677-proteinTCONS_00037677-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037677-exon-sc0001687-1575043694:5275..5405TCONS_00037677-exon-sc0001687-1575043694:5275..5405Clytia hemisphaericaexon
TCONS_00037677-exon-sc0001687-1575043694:1733..1830TCONS_00037677-exon-sc0001687-1575043694:1733..1830Clytia hemisphaericaexon
TCONS_00037677-exon-sc0001687-1575043694:1485..1564TCONS_00037677-exon-sc0001687-1575043694:1485..1564Clytia hemisphaericaexon
TCONS_00037677-exon-sc0001687-1510915933:5275..5405TCONS_00037677-exon-sc0001687-1510915933:5275..5405Clytia hemisphaericaexon
TCONS_00037677-exon-sc0001687-1510915933:1733..1830TCONS_00037677-exon-sc0001687-1510915933:1733..1830Clytia hemisphaericaexon
TCONS_00037677-exon-sc0001687-1510915933:1485..1564TCONS_00037677-exon-sc0001687-1510915933:1485..1564Clytia hemisphaericaexon
TCONS_00037677-exon-sc0001687-1491911889:5275..5405TCONS_00037677-exon-sc0001687-1491911889:5275..5405Clytia hemisphaericaexon
TCONS_00037677-exon-sc0001687-1491911889:1733..1830TCONS_00037677-exon-sc0001687-1491911889:1733..1830Clytia hemisphaericaexon
TCONS_00037677-exon-sc0001687-1491911889:1485..1564TCONS_00037677-exon-sc0001687-1491911889:1485..1564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001687supercontigsc0001687:1485..5405 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354604	0.345795	0	0.0664986	3.51602	4.25604	1.95804	3.80616	1.14221	1.77312	0.718523	0.472329	1.1812	1.71443	1.15627	0.997665	0.638111	1.04613	0.753904	0.394453	0.403508	0	0.608469	0	3.3138	6.43182	0.189516	0.798684	0.296558	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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