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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037673 ID=TCONS_00037673|Name=TCONS_00037673|organism=Clytia hemisphaerica|type=transcript|length=601bp
TGTTCGGTTGTAACCCCCGGTTTTCATTTTCGTCTACAAATTCATAACAT
TGGATAAAATAAGTCTTTCAAAATTCTGGTTGATGAAAGCAGGAAGCAAG
CCAAACCAAGTTGTTGGAAGAAGACTGAAGCAAGACCTGATTTCTCCCCT
AAGCCTTTGTCACAACGTTCGACAATGTGTTGTTGTGAACATGGATAAAA
TCATTGTCATTGTTctgcaatatattttatattGAGAGATGGTCCAATCA
AAGTGTTGTAGGATGCTGTGATTTTCAATATCGATTAAATCGACTTATGA
ATTTATCCCAGCCATTCAAATGATTGCTGCATACCAATTTTTATAGCTAT
ATAGTGGAAGCTGACTTTTGAACAATTATCAAATGAATTTGATGTACTTG
GTATCCTCCTTGGAATATATACAGTTTACcattatttctagtttttcatt
taatttgaaatcaatggaaATTAGATTATCTTGGCAAgagttttttatat
tatttatttattagtttttagatCCTCAAAATGATTCATCATTATACTct
aaagctttttaagagtGTCCAGGCAAGATTggcaatgatttttttttgca
a Run BLAST on NCBI transcript from alignment at sc0001684:41701..44869- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037673 ID=TCONS_00037673|Name=TCONS_00037673|organism=Clytia hemisphaerica|type=transcript|length=3169bp|location=Sequence derived from alignment at sc0001684:41701..44869- (Clytia hemisphaerica)
TGTTCGGTTGTAACCCCCGGTTTTCATTTTCGTCTACAAATTCATAACAT
TGGATAAAATAAGTCTTTCAAAATTCTGGTTGATGAAAGCAGGAAGCAAG
CCAAACCAAGTTGTTGGAAGAAGACTGAAGCAAGACCTGATTTCTCCCCT
AAGCCTTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAGCCTTTGTAAGTACCAAATTTAGCTACT
TTTCAGAGTTTAGCCACTTGAATATTAGAACTGAAAATGTCCTTTTTGTC
TTAGCTGGAATAGTTTTTCTGAGACACTCTTTCACATGATGCTTTCTTTC
TGGCACTTTTTCAGCAGTCTGTCACTTTTTTCTGAGAGATGCCTCTGGCA
ATATCACATTAATGCCTTTTCAGGGGACTGTGACTAGATATTTTCTTTCT
TTGATTGTTGTTTCAAGTGAATGTATTGCAACAATAAATACTGTATTTCT
AAAATTCTAAAGAAACAGACCGGAGAAAGCCAACAGACCTATACATGTTT
TACAAGACTTTTGTAAAGTTTATTCAAATTAAATAAATAGATATAGAAAT
AGGTTCAATGGAAACTTGAATAGCCGTCCTTTATTGGGGGGGTTGTACTT
TTACGGTGTGACGGGACGGGGTTGGCCATTTTTAAGTCGAAAAAAAAGAA
GGGAAAACGGTATTTTAAAATAAGACGGTGACGGTATTTGGCCTTATTTT
TTTGTCATTAGCCGGTATATTTGAACTTGTACAAACCGGTGTGACGGTGT
TATTATTTTTTTCAATTTTCAAGATTCCGGGATTTAGCAAAAATTTAGAC
GTGAAAACGGGTTACGACATAAGTTGGCGCCCCAAAATGGTATACCAAAT
GGCACACCAAATGGCATAGCGAATTTATCTATGTATCTACGCATCCATGT
ATCTATGTATCTATGTATCTATATATCTACATATCCATGTATCTATATAT
CTACGTATCTATGTTTCTACATATCCATGTATCTATCTGTCTATGTACCT
ATGTATTTATGTATCTATATATCTACATATCTACGCATCCATGTATCTAC
ATATCAACGTATCTATGTATCTATGTATCTACATATCTACGCATCTATGT
ATCTACATATCTACGCATCTATGTATCTACATATCTACGCATCTATGTAT
CTACATATCCACGTATCTATGTATCTACATATCTACGCATCCATGTATCC
TTGTATCTATGTATCTACGCATCTATGTATCTATATATCTACATATCCAT
GTATCTATGTATCTATATATCTACATATCTATGTATCTACATATCTACGC
ATCCATGTATCTATGTATCTATGTATCTACATATCTACATATCCATGTAT
CTATATATCTATGGATCAACATATCCACGTATCTATGTATCTACATATCT
ACGCATTCATGTATCTATGTATCTACATATCTACGCATCCATGTATCTAT
GTATCTATATATGTACATATCCATGTATTTATATATCTATGTATCTACAT
ATCCATGATTGTATCTATGTATCTATGTATCTATATATCTACATATTTAT
GCATCCATGTATCTACATATCCATGTATCTATGTATGTGTAGATAATATA
GATACATAGATACATGGATGCGTAGATACATAAATACATAGGTACATAGA
TACATAGATACATAAATACATAGGTACATAGATACATAGATACATAGATA
CATAGATACATGGATATGTATACATAGATACGTATATATATAGATACGTA
TATATATATAGATATATAGATTTATAGATACATGGATATGTAGATATATA
GATACATAGATACATGGATGCGTAGATACATAGATAAATTCGCTATGCCA
TTTGGTGTGCCATTTGCGGTGCCATTTTGGTATGCCATTTTGGGGCGCCA
ACTTATGTCGTAACCCCGTGAAAACGGTATTTCGAACCCCTACAACCTAA
TTTTTCCTTCCAACCTACCCATCTTCAAAATCTAGGGTTTGGGGATTGAC
AAACCAACCTTTTTTAAGTCCAGCCTGGTCCATTTGTTATGAAAGGGTTG
TGCTCCATATTTTTTTTCAAGATTTACAGAACAGCACAAAGAAGTATGAA
ATCTATATATTGCATCAAATTGTCTCTTGAAAATTGTAATTAAAACAAAT
TAGCTAAACTAAAATGAGAATGAATTAAATTTTTGGTTGTTTTGGTTTTT
TCATAATGATAGAAATAATTGTTAACTCTGATTACACAAAATGTTAGGCA
TTTTAAATGGGATGGATAAAAGAATAAAAAAGTTTCAGCTTTAAATGCTT
TTAGCTTTTTTACAGCTGGGATTAGATAATTCTTTAATTCAAGCTGGTGT
GTAAATATTCTTTACTCTTCCTCACCTCAGGTCACAACGTTCGACAATGT
GTTGTTGTGAACATGGATAAAATCATTGTCATTGTTCTGCAATATATTTT
ATATTGTAAGTATTTATTTTTCTTCAAATTTCTTTTGTATTCAACACAAT
TAAAATCAGAGAGTATCCTAATTAGTTTAACTAATAAGAGCATTACAAAC
TGAATTCGTACTAGAAACTCTTCTCCTTCAGGCATCAGGGAGATGCAAGC
AACAACTTGACTGCTGGTATCATGTACCAAAGTTGATAGTTTCTAAGATT
TCTGGCAGACTTGATAAATTAAATGTTTATGTATTTACTTATTTTGTTCA
GGAGAGATGGTCCAATCAAAGTGTTGTAGGATGCTGTGATTTTCAATATC
GATTAAATCGACTTATGAATTTATCCCAGCCATTCAAATGATTGCTGCAT
ACCAATTTTTATAGCTATATAGTGGAAGCTGACTTTTGAACAATTATCAA
ATGAATTTGATGTACTTGGTATCCTCCTTGGAATATATACAGTTTACCAT
TATTTCTAGTTTTTCATTTAATTTGAAATCAATGGAAATTAGATTATCTT
GGCAAGAGTTTTTTATATTATTTATTTATTAGTTTTTAGATCCTCAAAAT
GATTCATCATTATACTCTAAAGCTTTTTAAGAGTGTCCAGGCAAGATTGG
CAATGATTTTTTTTTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037673-exon-sc0001684-1575043694:44712..44869 | TCONS_00037673-exon-sc0001684-1575043694:44712..44869 | Clytia hemisphaerica | exon |
| TCONS_00037673-exon-sc0001684-1575043694:42315..42389 | TCONS_00037673-exon-sc0001684-1575043694:42315..42389 | Clytia hemisphaerica | exon |
| TCONS_00037673-exon-sc0001684-1575043694:41701..42068 | TCONS_00037673-exon-sc0001684-1575043694:41701..42068 | Clytia hemisphaerica | exon |
| TCONS_00037673-exon-sc0001684-1510915933:44712..44869 | TCONS_00037673-exon-sc0001684-1510915933:44712..44869 | Clytia hemisphaerica | exon |
| TCONS_00037673-exon-sc0001684-1510915933:42315..42389 | TCONS_00037673-exon-sc0001684-1510915933:42315..42389 | Clytia hemisphaerica | exon |
| TCONS_00037673-exon-sc0001684-1510915933:41701..42068 | TCONS_00037673-exon-sc0001684-1510915933:41701..42068 | Clytia hemisphaerica | exon |
| TCONS_00037673-exon-sc0001684-1491911889:44712..44869 | TCONS_00037673-exon-sc0001684-1491911889:44712..44869 | Clytia hemisphaerica | exon |
| TCONS_00037673-exon-sc0001684-1491911889:42315..42389 | TCONS_00037673-exon-sc0001684-1491911889:42315..42389 | Clytia hemisphaerica | exon |
| TCONS_00037673-exon-sc0001684-1491911889:41701..42068 | TCONS_00037673-exon-sc0001684-1491911889:41701..42068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001684 | supercontig | sc0001684:41701..44869 - |
Blast
The following BLAST results are available for this feature:
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