TCONS_00037671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037671
Unique NameTCONS_00037671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037671 ID=TCONS_00037671|Name=TCONS_00037671|organism=Clytia hemisphaerica|type=transcript|length=545bp
AAGTCTTTCAAAATTCTGGTTGATGAAAGCAGGAAGCAAGCCAAACCAAG
TTGTTGGAAGAAGACTGAAGCAAGACCTGATTTCTCCCCTAAGCCTTTGT
CACAACGTTCGACAATGTGTTGTTGTGAACATGGATAAAATCATTGTCAT
TGTTctgcaatatattttatattgtaaGAGAGATGGTCCAATCAAAGTGT
TGTAGGATGCTGTGATTTTCAATATCGATTAAATCGACTTATGAATTTAT
CCCAGCCATTCAAATGATTGCTGCATACCAATTTTTATAGCTATATAGTG
GAAGCTGACTTTTGAACAATTATCAAATGAATTTGATGTACTTGGTATCC
TCCTTGGAATATATACAGTTTACcattatttctagtttttcatttaattt
gaaatcaatggaaATTAGATTATCTTGGCAAgagttttttatattattta
tttattagtttttagatCCTCAAAATGATTCATCATTATACTctaaagct
ttttaagagtGTCCAGGCAAGATTggcaatgatttttttttgcaa
Run BLAST on NCBI

transcript from alignment at sc0001684:41701..44809-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037671 ID=TCONS_00037671|Name=TCONS_00037671|organism=Clytia hemisphaerica|type=transcript|length=3109bp|location=Sequence derived from alignment at sc0001684:41701..44809- (Clytia hemisphaerica)
AAGTCTTTCAAAATTCTGGTTGATGAAAGCAGGAAGCAAGCCAAACCAAG
TTGTTGGAAGAAGACTGAAGCAAGACCTGATTTCTCCCCTAAGCCTTTGT
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAGCCTTTGTAAGTACCAAATTTAGCTACTTTTCAGAGTT
TAGCCACTTGAATATTAGAACTGAAAATGTCCTTTTTGTCTTAGCTGGAA
TAGTTTTTCTGAGACACTCTTTCACATGATGCTTTCTTTCTGGCACTTTT
TCAGCAGTCTGTCACTTTTTTCTGAGAGATGCCTCTGGCAATATCACATT
AATGCCTTTTCAGGGGACTGTGACTAGATATTTTCTTTCTTTGATTGTTG
TTTCAAGTGAATGTATTGCAACAATAAATACTGTATTTCTAAAATTCTAA
AGAAACAGACCGGAGAAAGCCAACAGACCTATACATGTTTTACAAGACTT
TTGTAAAGTTTATTCAAATTAAATAAATAGATATAGAAATAGGTTCAATG
GAAACTTGAATAGCCGTCCTTTATTGGGGGGGTTGTACTTTTACGGTGTG
ACGGGACGGGGTTGGCCATTTTTAAGTCGAAAAAAAAGAAGGGAAAACGG
TATTTTAAAATAAGACGGTGACGGTATTTGGCCTTATTTTTTTGTCATTA
GCCGGTATATTTGAACTTGTACAAACCGGTGTGACGGTGTTATTATTTTT
TTCAATTTTCAAGATTCCGGGATTTAGCAAAAATTTAGACGTGAAAACGG
GTTACGACATAAGTTGGCGCCCCAAAATGGTATACCAAATGGCACACCAA
ATGGCATAGCGAATTTATCTATGTATCTACGCATCCATGTATCTATGTAT
CTATGTATCTATATATCTACATATCCATGTATCTATATATCTACGTATCT
ATGTTTCTACATATCCATGTATCTATCTGTCTATGTACCTATGTATTTAT
GTATCTATATATCTACATATCTACGCATCCATGTATCTACATATCAACGT
ATCTATGTATCTATGTATCTACATATCTACGCATCTATGTATCTACATAT
CTACGCATCTATGTATCTACATATCTACGCATCTATGTATCTACATATCC
ACGTATCTATGTATCTACATATCTACGCATCCATGTATCCTTGTATCTAT
GTATCTACGCATCTATGTATCTATATATCTACATATCCATGTATCTATGT
ATCTATATATCTACATATCTATGTATCTACATATCTACGCATCCATGTAT
CTATGTATCTATGTATCTACATATCTACATATCCATGTATCTATATATCT
ATGGATCAACATATCCACGTATCTATGTATCTACATATCTACGCATTCAT
GTATCTATGTATCTACATATCTACGCATCCATGTATCTATGTATCTATAT
ATGTACATATCCATGTATTTATATATCTATGTATCTACATATCCATGATT
GTATCTATGTATCTATGTATCTATATATCTACATATTTATGCATCCATGT
ATCTACATATCCATGTATCTATGTATGTGTAGATAATATAGATACATAGA
TACATGGATGCGTAGATACATAAATACATAGGTACATAGATACATAGATA
CATAAATACATAGGTACATAGATACATAGATACATAGATACATAGATACA
TGGATATGTATACATAGATACGTATATATATAGATACGTATATATATATA
GATATATAGATTTATAGATACATGGATATGTAGATATATAGATACATAGA
TACATGGATGCGTAGATACATAGATAAATTCGCTATGCCATTTGGTGTGC
CATTTGCGGTGCCATTTTGGTATGCCATTTTGGGGCGCCAACTTATGTCG
TAACCCCGTGAAAACGGTATTTCGAACCCCTACAACCTAATTTTTCCTTC
CAACCTACCCATCTTCAAAATCTAGGGTTTGGGGATTGACAAACCAACCT
TTTTTAAGTCCAGCCTGGTCCATTTGTTATGAAAGGGTTGTGCTCCATAT
TTTTTTTCAAGATTTACAGAACAGCACAAAGAAGTATGAAATCTATATAT
TGCATCAAATTGTCTCTTGAAAATTGTAATTAAAACAAATTAGCTAAACT
AAAATGAGAATGAATTAAATTTTTGGTTGTTTTGGTTTTTTCATAATGAT
AGAAATAATTGTTAACTCTGATTACACAAAATGTTAGGCATTTTAAATGG
GATGGATAAAAGAATAAAAAAGTTTCAGCTTTAAATGCTTTTAGCTTTTT
TACAGCTGGGATTAGATAATTCTTTAATTCAAGCTGGTGTGTAAATATTC
TTTACTCTTCCTCACCTCAGGTCACAACGTTCGACAATGTGTTGTTGTGA
ACATGGATAAAATCATTGTCATTGTTCTGCAATATATTTTATATTGTAAG
TATTTATTTTTCTTCAAATTTCTTTTGTATTCAACACAATTAAAATCAGA
GAGTATCCTAATTAGTTTAACTAATAAGAGCATTACAAACTGAATTCGTA
CTAGAAACTCTTCTCCTTCAGGCATCAGGGAGATGCAAGCAACAACTTGA
CTGCTGGTATCATGTACCAAAGTTGATAGTTTCTAAGATTTCTGGCAGAC
TTGATAAATTAAATGTTTATGTATTTACTTATTTTGTTCAGGAGAGATGG
TCCAATCAAAGTGTTGTAGGATGCTGTGATTTTCAATATCGATTAAATCG
ACTTATGAATTTATCCCAGCCATTCAAATGATTGCTGCATACCAATTTTT
ATAGCTATATAGTGGAAGCTGACTTTTGAACAATTATCAAATGAATTTGA
TGTACTTGGTATCCTCCTTGGAATATATACAGTTTACCATTATTTCTAGT
TTTTCATTTAATTTGAAATCAATGGAAATTAGATTATCTTGGCAAGAGTT
TTTTATATTATTTATTTATTAGTTTTTAGATCCTCAAAATGATTCATCAT
TATACTCTAAAGCTTTTTAAGAGTGTCCAGGCAAGATTGGCAATGATTTT
TTTTTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022417XLOC_022417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037671-exon-sc0001684-1575043694:44712..44809TCONS_00037671-exon-sc0001684-1575043694:44712..44809Clytia hemisphaericaexon
TCONS_00037671-exon-sc0001684-1575043694:42311..42389TCONS_00037671-exon-sc0001684-1575043694:42311..42389Clytia hemisphaericaexon
TCONS_00037671-exon-sc0001684-1575043694:41701..42068TCONS_00037671-exon-sc0001684-1575043694:41701..42068Clytia hemisphaericaexon
TCONS_00037671-exon-sc0001684-1510915933:44712..44809TCONS_00037671-exon-sc0001684-1510915933:44712..44809Clytia hemisphaericaexon
TCONS_00037671-exon-sc0001684-1510915933:42311..42389TCONS_00037671-exon-sc0001684-1510915933:42311..42389Clytia hemisphaericaexon
TCONS_00037671-exon-sc0001684-1510915933:41701..42068TCONS_00037671-exon-sc0001684-1510915933:41701..42068Clytia hemisphaericaexon
TCONS_00037671-exon-sc0001684-1491911889:44712..44809TCONS_00037671-exon-sc0001684-1491911889:44712..44809Clytia hemisphaericaexon
TCONS_00037671-exon-sc0001684-1491911889:42311..42389TCONS_00037671-exon-sc0001684-1491911889:42311..42389Clytia hemisphaericaexon
TCONS_00037671-exon-sc0001684-1491911889:41701..42068TCONS_00037671-exon-sc0001684-1491911889:41701..42068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001684supercontigsc0001684:41701..44809 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.39597	10.7133	0.770866	0.514821	42.1698	10.1067	2.5331	1.19278	14.6681	19.8771	15.4937	10.6962	11.4214	8.12732	10.5446	4.96657	20.2804	9.83106	11.7985	18.033	30.1313	40.4178	28.5703	35.776	1.17145	1.25016	69.5851	44.5201	42.3569	33.6821
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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