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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037670 ID=TCONS_00037670|Name=TCONS_00037670|organism=Clytia hemisphaerica|type=transcript|length=1281bp
GTAttgtataaaaaaaatttttgacgttactttgaaattgtcaaaaagat
gagaaattattGCATGGTGAAGAGAAAAATCATTTATGTTTGAGTCGGAC
CTTTATCTTGCCTTTATTTTCTACCTGAAGACAAGagactttgtgaaaaa
actGGTATCTTGTAATCTGATATTGTTgtatcaaatgaaaaaaaaatcaa
aatatgagaCAAGATCATATAAAAACACTTCCAAGACACTTGAGCCCAAT
CTTGAAAATAAACACTTCTTCAAGTAGAGGTTTGCATTTGCAAAGTGTTT
GTGTGCGATATTGCTTATTCAATTTCATGGGATACTTGTCATCATCACAA
GTAAgaatttatgtgtttaaaaaatattgactttaatttcataTTTTCGT
TAGCAGCCACCGACCAAATAATCATTCCCCATCTGTCAAAAATGCTAAAC
TCTTCAAACATGGCTGGATTTTTCACGAAGAGCATTTCTCAAATCATTGG
AAGTAGCTATTATAACAAAGCACCGNAACATGGCTGGATTTTTCACGAAG
AGCATTTCTCAAATCATTGGAAGTAGCTATTATAACAAAACACCTGAAGC
CGGCTCTCAATACATTTTGGGAACGTCTCCTCCAGATGGTTCAATGGAGT
TGTACATTTTGGACAACAAGCTACAAGTTTGTTCATGTCCTAGGGAAAAG
ATACCACTGCTCTGTCACTCAATCATTCAGATGGCCTTATTGCCAGACTC
AAGcCCAAGCTTTTTCAGTGTCACAGAAGCAGAGAATATGACTCTGATTT
TGACTGAAGAGGATTTCAAACAATTACCGGAAAATGTTGAGCTGGAGACT
TCTGGTCAGGTGTGGAGAGTTCTCACTGTTTCTGTTGGTGCTCTTGGCTC
CTTCAATGAAATCATGGGTGTCAGTAAGATTGCAAAATCCGCCATCGGAC
CATTAGCTGACCATAATGTTTCTGTACTATGTCTGTCAACCTATCAATCT
GACTATATCTTGGTGCAAGAATCTCAACTGAACGAAGCCATTCAATGTTT
GAGCTCATActtcaaaatattcaatgaagATCATCAACGTGTTAGCGAAT
CAAAAGCGACCACACCCCTCTCCCCAACACCCAGTAAGGTTTTAGTAGag
tttatgaaatctggtgctTCATGTTGTAAAAATACTAAAGGagcgttttt
tatttttatagggggtaaaaagttattcgaaaatttccaggggtaaaaga
ctgattttggtTTGTCCATCGTCACTTTGAG Run BLAST on NCBI protein sequence of TCONS_00037670-protein >TCONS_00037670-protein ID=TCONS_00037670-protein|Name=TCONS_00037670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MAGFFTKSISQIIGSSYYNKTPEAGSQYILGTSPPDGSMELYILDNKLQV
CSCPREKIPLLCHSIIQMALLPDSSPSFFSVTEAENMTLILTEEDFKQLP
ENVELETSGQVWRVLTVSVGALGSFNEIMGVSKIAKSAIGPLADHNVSVL
CLSTYQSDYILVQESQLNEAIQCLSSYFKIFNEDHQRVSESKATTPLSPT
PSKVLVEFMKSGASCCKNTKGAFFIFIGGKKLFENFQG Run BLAST on NCBI transcript from alignment at sc0001684:28201..31070- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037670 ID=TCONS_00037670|Name=TCONS_00037670|organism=Clytia hemisphaerica|type=transcript|length=2870bp|location=Sequence derived from alignment at sc0001684:28201..31070- (Clytia hemisphaerica)
GTATTGTATAAAAAAAATTTTTGACGTTACTTTGAAATTGTCAAAAAGAT
GAGAAATTATTGCATGGTGAAGAGAAAAATCATTTATGTTTGAGTCGGAC
CTTTATCTTGCCTTTATTTTCTACCTGAAGACAAGAGACTTTGTGAAAAA
ACTGGTATCTTGTAATCTGATATTGTTGTATCAAATGAAAAAAAAATCAA
AATATGAGACAAGATCATATAAAAACACTTCCAAGACACTTGAGCCCAAT
CTTGAAAATAAACACTTCTTCAAGTAGAGGTTTGCATTTGCAAAGTGTTT
GTGTGCGATATTGCTTATTCAATTTCATGGGATACTTGTCATCATCACAA
GTAAGAATTTATGTGTTTAAAAAATATTGACTTTAATTTCATATTTTCGT
TAGCAGCCACCGACCAAATAATCATTCCCCATCTGTCAAAAATGCTAAAC
TCTTCAAACATGGCTGGATTTTTCACGAAGAGCATTTCTCAAATCATTGG
AAGTAGCTATTATAACAAAGCACCGNAACATGGCTGGATTTTTCACGAAG
AGCATTTCTCAAATCATTGGAAGTAGCTATTATAACAAAACACCTGAAGC
CGGCTCTCAATACATTTTGGGAACGTCTCCTCCAGATGGTTCAATGGAGT
TGTACATTTTGGACAACAAGCTACAAGTTTGTTCATGTCCTAGGGAAAAG
ATACCACTGCTCTGTCACTCAATCATTCAGATGGCCTTATTGCCAGACTC
AAGGTGAGTAGGTGTTCTTTACATTTGAATTTAGAAAATAATTTCCTTTT
TTTATTATTTTTTATCTTTTGATACTGAATGTCAAAGTCTCAGTATTGGG
ATATTCCAGATATAGTCTGTATACCCCCTATGTTGAGAGGGTGTGAAGTC
CAGGATGGTCTGGAAAATAAAAAATCCAGGTGCGGTTTTTTGAGTGTACA
ACTCCAGAGTAGTCAGTAAAATGAGGTGGAAAGTCTAGGGTGGTCAGCAA
AACGGGGTTTCAAATCCAGGGTGGCCACCTTTCCAAAGAAAGACCTTAAA
ACATAGAGGTTACAACTTTTTTCTGAGTAGCCCATCATATGAATATTGTA
CCTGGATAATTTTTTAACATTCCTTGTGCTAATAATGTAAACATTATTAT
TTTTTGTTTTCTTTCAGCCCAAGCTTTTTCAGTGTCACAGAAGCAGAGAA
TATGACTCTGATTTTGACTGAAGAGGATTTCAAACGTAAGAAAATGTCTT
TTTAATCGAATTCTAAATTGTAGCCAAAAATTGGAACTCTATAACGTTAT
TTAGAGAAATCTGTTTTTCAGACATTTTATGGTTGGGTCATTTAAATGTA
AAGTTTCACTTTGGTTTTGATAATCTTTTTTGTCTAGACTTGTTCATTCT
GATTACATTAACAACTGTTGTTTGGAAAAACTTTTTAAATTTGATTAACG
GTAGACTTTTATGAGGCAACAATGATAATGTGATTAAGTAACAGGTTGTC
ACATTTGACAACATCTGATAACACTTTCATTTGTTTTGATTCAAAGAAAC
AGCTTTTTTTTAAGTTATTTCATAAAGAAAGCTTTCCTGCCCTATCAAGT
CATATTTTTATATGAAATTTTATATACATCATCAAAAAAATGATTTTTTT
AAGGAAGTGTTCCTTTCATGTCTGTATATAGCCTAGAAGCTAGTACTAAA
ATTATATCCCAACAAAATTATCAACTAAGTAAAATAGCTTTCATATTTAC
GACTGTTTTGATAAAATAAAGGTGTTTTATTTCAGCTCTTTCAGTTCTTA
CTTTACCTAACCTAGTTCATATCATTCATCACCATCAAAGAACAAAATGA
AACCCAATAAAACTTAGCTCTAGTTTAGACGGCCGACTTTCTGCCCTGCC
TGTTCCAATTATTAGAGTAGGCAAAAAAATGGACAAAAAGTTGGTAGTTA
AAATCTTTGCTTTAAAAAAGTTGAAAGAAGACATTGCATTGAAGTCAAAA
GAGGGCTATGCATTGACTTTATATAGCCAACTTTCTGTCAACTTTAATTC
ACAATTAGAATAGTCAGGGCAAAGAGTGGGCCGTCTAAACTAAATCTTTT
TGATTTAATCTTTTCCCTCTGTAGAATTACCGGAAAATGTTGAGCTGGAG
ACTTCTGGTCAGGTGTGGAGAGTTCTCACTGTTTCTGTTGGTGCTCTTGG
CTCCTTCAATGAAATCATGGGTGTCAGTAAGATTGCAAAATCCGCCATCG
GACCATTAGCTGACCATAATGTTTCTGTACTATGTCTGTCAACCTATCAA
TCTGACTATATCTTGGTAATAATCCAATTTTTCATACTGTTAGTTTTCGG
TACCTGAAAATTTTTTTTAGTTATTAGGGTTGACAATTTTTTGCTACTCA
AATTGTATAACCTTAAATATCAGGGCTTTCATAGAGTTAATTTCCAACTG
CATTGTTTTTACGTTCCATGACTAGAACCTCTATAACTCGAATGAACTGA
AATCTGATATCTTCCTAGTTATAAATACTGACCCTACTGGATCTTAATTT
GAAGCTATCATTGGTCATTTTAATATTGATTTAATCCTTTATAATTACTA
GGTGCAAGAATCTCAACTGAACGAAGCCATTCAATGTTTGAGCTCATACT
TCAAAATATTCAATGAAGATCATCAACGTGTTAGCGAATCAAAAGCGACC
ACACCCCTCTCCCCAACACCCAGTAAGGTTTTAGTAGAGTTTATGAAATC
TGGTGCTTCATGTTGTAAAAATACTAAAGGAGCGTTTTTTATTTTTATAG
GGGGTAAAAAGTTATTCGAAAATTTCCAGGGGTAAAAGACTGATTTTGGT
TTGTCCATCGTCACTTTGAG Coding sequence (CDS) from alignment at sc0001684:28201..31070- >TCONS_00037670 ID=TCONS_00037670|Name=TCONS_00037670|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at sc0001684:28201..31070- (Clytia hemisphaerica)
GTGCAAGAATCTCAACTGAACGAAGCCATTCAATGTTTGAGCTCATACTT
CAAAATATTCAATGAAGATCATCAACGTGTTAGCGAATCAAAAGCGACCA
CACCCCTCTCCCCAACACCCAGTAAGGTTTTAGTAGAGTTTATGAAATCT
GGTGCTTCATGTTGTAAAAATACTAAAGGAGCGTTTTTTATTTTTATAGG
GGGTAAAAAGTTATTCGAAAATTTCCAGGGGTAAAATTACCGGAAAATGT
TGAGCTGGAGACTTCTGGTCAGGTGTGGAGAGTTCTCACTGTTTCTGTTG
GTGCTCTTGGCTCCTTCAATGAAATCATGGGTGTCAGTAAGATTGCAAAA
TCCGCCATCGGACCATTAGCTGACCATAATGTTTCTGTACTATGTCTGTC
AACCTATCAATCTGACTATATCTTGCCCAAGCTTTTTCAGTGTCACAGAA
GCAGAGAATATGACTCTGATTTTGACTGAAGAGGATTTCAAACATGGCTG
GATTTTTCACGAAGAGCATTTCTCAAATCATTGGAAGTAGCTATTATAAC
AAAACACCTGAAGCCGGCTCTCAATACATTTTGGGAACGTCTCCTCCAGA
TGGTTCAATGGAGTTGTACATTTTGGACAACAAGCTACAAGTTTGTTCAT
GTCCTAGGGAAAAGATACCACTGCTCTGTCACTCAATCATTCAGATGGCC
TTATTGCCAGACTCAAGGTGCAAGAATCTCAACTGAACGAAGCCATTCAA
TGTTTGAGCTCATACTTCAAAATATTCAATGAAGATCATCAACGTGTTAG
CGAATCAAAAGCGACCACACCCCTCTCCCCAACACCCAGTAAGGTTTTAG
TAGAGTTTATGAAATCTGGTGCTTCATGTTGTAAAAATACTAAAGGAGCG
TTTTTTATTTTTATAGGGGGTAAAAAGTTATTCGAAAATTTCCAGGGGTA
AAATTACCGGAAAATGTTGAGCTGGAGACTTCTGGTCAGGTGTGGAGAGT
TCTCACTGTTTCTGTTGGTGCTCTTGGCTCCTTCAATGAAATCATGGGTG
TCAGTAAGATTGCAAAATCCGCCATCGGACCATTAGCTGACCATAATGTT
TCTGTACTATGTCTGTCAACCTATCAATCTGACTATATCTTGCCCAAGCT
TTTTCAGTGTCACAGAAGCAGAGAATATGACTCTGATTTTGACTGAAGAG
GATTTCAAACATGGCTGGATTTTTCACGAAGAGCATTTCTCAAATCATTG
GAAGTAGCTATTATAACAAAACACCTGAAGCCGGCTCTCAATACATTTTG
GGAACGTCTCCTCCAGATGGTTCAATGGAGTTGTACATTTTGGACAACAA
GCTACAAGTTTGTTCATGTCCTAGGGAAAAGATACCACTGCTCTGTCACT
CAATCATTCAGATGGCCTTATTGCCAGACTCAAGGTGCAAGAATCTCAAC
TGAACGAAGCCATTCAATGTTTGAGCTCATACTTCAAAATATTCAATGAA
GATCATCAACGTGTTAGCGAATCAAAAGCGACCACACCCCTCTCCCCAAC
ACCCAGTAAGGTTTTAGTAGAGTTTATGAAATCTGGTGCTTCATGTTGTA
AAAATACTAAAGGAGCGTTTTTTATTTTTATAGGGGGTAAAAAGTTATTC
GAAAATTTCCAGGGGTAAAATTACCGGAAAATGTTGAGCTGGAGACTTCT
GGTCAGGTGTGGAGAGTTCTCACTGTTTCTGTTGGTGCTCTTGGCTCCTT
CAATGAAATCATGGGTGTCAGTAAGATTGCAAAATCCGCCATCGGACCAT
TAGCTGACCATAATGTTTCTGTACTATGTCTGTCAACCTATCAATCTGAC
TATATCTTGCCCAAGCTTTTTCAGTGTCACAGAAGCAGAGAATATGACTC
TGATTTTGACTGAAGAGGATTTCAAACATGGCTGGATTTTTCACGAAGAG
CATTTCTCAAATCATTGGAAGTAGCTATTATAACAAAACACCTGAAGCCG
GCTCTCAATACATTTTGGGAACGTCTCCTCCAGATGGTTCAATGGAGTTG
TACATTTTGGACAACAAGCTACAAGTTTGTTCATGTCCTAGGGAAAAGAT
ACCACTGCTCTGTCACTCAATCATTCAGATGGCCTTATTGCCAGACTCAA
GGTGCAAGAATCTCAACTGAACGAAGCCATTCAATGTTTGAGCTCATACT
TCAAAATATTCAATGAAGATCATCAACGTGTTAGCGAATCAAAAGCGACC
ACACCCCTCTCCCCAACACCCAGTAAGGTTTTAGTAGAGTTTATGAAATC
TGGTGCTTCATGTTGTAAAAATACTAAAGGAGCGTTTTTTATTTTTATAG
GGGGTAAAAAGTTATTCGAAAATTTCCAGGGGTAAAATTACCGGAAAATG
TTGAGCTGGAGACTTCTGGTCAGGTGTGGAGAGTTCTCACTGTTTCTGTT
GGTGCTCTTGGCTCCTTCAATGAAATCATGGGTGTCAGTAAGATTGCAAA
ATCCGCCATCGGACCATTAGCTGACCATAATGTTTCTGTACTATGTCTGT
CAACCTATCAATCTGACTATATCTTGCCCAAGCTTTTTCAGTGTCACAGA
AGCAGAGAATATGACTCTGATTTTGACTGAAGAGGATTTCAAACATGGCT
GGATTTTTCACGAAGAGCATTTCTCAAATCATTGGAAGTAGCTATTATAA
CAAAACACCTGAAGCCGGCTCTCAATACATTTTGGGAACGTCTCCTCCAG
ATGGTTCAATGGAGTTGTACATTTTGGACAACAAGCTACAAGTTTGTTCA
TGTCCTAGGGAAAAGATACCACTGCTCTGTCACTCAATCATTCAGATGGC
CTTATTGCCAGACTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037670-exon-sc0001684-1575043694:30318..31070 | TCONS_00037670-exon-sc0001684-1575043694:30318..31070 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1575043694:29836..29903 | TCONS_00037670-exon-sc0001684-1575043694:29836..29903 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1575043694:28756..28946 | TCONS_00037670-exon-sc0001684-1575043694:28756..28946 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1575043694:28201..28469 | TCONS_00037670-exon-sc0001684-1575043694:28201..28469 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1510915933:30318..31070 | TCONS_00037670-exon-sc0001684-1510915933:30318..31070 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1510915933:29836..29903 | TCONS_00037670-exon-sc0001684-1510915933:29836..29903 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1510915933:28756..28946 | TCONS_00037670-exon-sc0001684-1510915933:28756..28946 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1510915933:28201..28469 | TCONS_00037670-exon-sc0001684-1510915933:28201..28469 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1491911889:30318..31070 | TCONS_00037670-exon-sc0001684-1491911889:30318..31070 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1491911889:29836..29903 | TCONS_00037670-exon-sc0001684-1491911889:29836..29903 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1491911889:28756..28946 | TCONS_00037670-exon-sc0001684-1491911889:28756..28946 | Clytia hemisphaerica | exon |
| TCONS_00037670-exon-sc0001684-1491911889:28201..28469 | TCONS_00037670-exon-sc0001684-1491911889:28201..28469 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001684 | supercontig | sc0001684:28201..31070 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00037670 vs. Swiss-Prot (Human)
Match: CAST1 (Cytosolic arginine sensor for mTORC1 subunit 1 OS=Homo sapiens GN=CASTOR1 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 6.809e-30 Identity = 66/147 (44.90%), Postives = 97/147 (65.99%), Query Frame = 2
Query: 644 MELYILDNKLQVCSCPREKIPLLCHSIIQMALLPDSSP-SFFSVTEA-ENMTLILTEEDFKQLPENVELETSGQVWRVLTVSVGALGSFNEIMGVSKIAKSAIGPLADHNVSVLCLSTYQSDYILVQESQLNEAIQCLSSYFKIFNE 1078
MEL+IL+++++V S R + L H +I++ LP S FFS+TE E+ TL++ EE FK+LP + L+ + W VL VS + G+ + GV+KIA+S I PLA+H+VSVL LSTYQ+D+ILV+E L+ I L+ F I+ E
Sbjct: 1 MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGFKELPPSEFLQVAEATWLVLNVSSHS-GAAVQAAGVTKIARSVIAPLAEHHVSVLMLSTYQTDFILVREQDLSVVIHTLAQEFDIYRE 146
The following BLAST results are available for this feature:
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