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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037669 ID=TCONS_00037669|Name=TCONS_00037669|organism=Clytia hemisphaerica|type=transcript|length=378bp
TTAGGTTATGCTCATAATTATGGAAGACGAGAATGACGACGAAGATGGAA
GAAAACTTACAATGGCATTGGATGACCTGTTTGTTGAACTTGAATTGGAT
GCTTCCAACAGCATAgctgaaatttttcaaagaatacTTGGAACTTTATT
AAGTCTGCAACGTGAGATATGGCAGGATTGTTTTCTCAAAATCATGGATG
GAAGTTTGCCGGAGAGGTTTTTTGCTGGAAATTTTAGCAAAGAAAGACAG
CTTAAAGATCTTGAGGCTCAATTCTTCAGACCAGACTTAGCTCGCTGTAG
TTCTTTTcaagatgtttttgaaaaatttgcaagGAAAAAATTGGTCCCGA
CACCTGAGTGTTACAAAGAAAATACAAC Run BLAST on NCBI protein sequence of TCONS_00037669-protein >TCONS_00037669-protein ID=TCONS_00037669-protein|Name=TCONS_00037669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MLIIMEDENDDEDGRKLTMALDDLFVELELDASNSIAEIFQRILGTLLSL
QREIWQDCFLKIMDGSLPERFFAGNFSKERQLKDLEAQFFRPDLARCSSF
QDVFEKFARKKLVPTPECYKENT Run BLAST on NCBI transcript from alignment at sc0001684:24822..25644- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037669 ID=TCONS_00037669|Name=TCONS_00037669|organism=Clytia hemisphaerica|type=transcript|length=823bp|location=Sequence derived from alignment at sc0001684:24822..25644- (Clytia hemisphaerica)
TTAGGTTATGCTCATAATTATGGAAGACGAGAATGACGACGAAGATGGAA
GAAAACTTACAATGGCATTGGATGACCTGTTTGTTGAACTTGAATTGGAT
GCTTCCAACAGCATAGCTGAAATTTTTCAAAGAATACTTGGAACTTTATT
AAGTCTGCAACGTGAGGTAATTGCCAGAATTTGATGTGAGACTATTATTG
AGAACTTTTGAACCAGAGAAATATATGTGATAGATGTATTTGACAAGTGA
CAAAAATTTTGCTTAATAGAAAAGCTTTACCTTCTTGCAAGGCTTTTCCT
TTATTAAAGGTTTGTTAAGGTAGTGGTCTGGTCAATAAATACCCAACATT
TTCAAAGCCTTAGCCCCCTATGGGAAATTTGATTCCATATCAAAATTACT
GTTTACAGATATGGCAGGATTGTTTTCTCAAAATCATGGATGGAAGTTTG
CCGGAGAGGTTTTTTGCTGGAAATTTTAGCAAAGAAAGACAGCTTAAAGG
TAAAATTCTCTACTACTTACCTAATTTTTAAGGTTTAAGGGTACGTAAGG
TCACCAATTCAAATTAATCTCACAATCGTAGCCTTACCTTCGAGAAATCT
TTCTATCCGGTTTGGCTATTTAAATCTAATACAACTCTATTGATTAGAAT
TTTCGGTTATTGATAAAAATGTTAAATCTACTTGATATAGTTTTTTTTAT
AGATCTTGAGGCTCAATTCTTCAGACCAGACTTAGCTCGCTGTAGTTCTT
TTCAAGATGTTTTTGAAAAATTTGCAAGGAAAAAATTGGTCCCGACACCT
GAGTGTTACAAAGAAAATACAAC Coding sequence (CDS) from alignment at sc0001684:24822..25644- >TCONS_00037669 ID=TCONS_00037669|Name=TCONS_00037669|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0001684:24822..25644- (Clytia hemisphaerica)
ATCTTGAGGCTCAATTCTTCAGACCAGACTTAGCTCGCTGTAGTTCTTTT
CAAGATGTTTTTGAAAAATTTGCAAGGAAAAAATTGGTCCCGACACCTGA
GTGTTACAAAGAAAATACAATATGGCAGGATTGTTTTCTCAAAATCATGG
ATGGAAGTTTGCCGGAGAGGTTTTTTGCTGGAAATTTTAGCAAAGAAAGA
CAGCTTAAAGATGCTCATAATTATGGAAGACGAGAATGACGACGAAGATG
GAAGAAAACTTACAATGGCATTGGATGACCTGTTTGTTGAACTTGAATTG
GATGCTTCCAACAGCATAGCTGAAATTTTTCAAAGAATACTTGGAACTTT
ATTAAGTCTGCAACGTGAGATCTTGAGGCTCAATTCTTCAGACCAGACTT
AGCTCGCTGTAGTTCTTTTCAAGATGTTTTTGAAAAATTTGCAAGGAAAA
AATTGGTCCCGACACCTGAGTGTTACAAAGAAAATACAATATGGCAGGAT
TGTTTTCTCAAAATCATGGATGGAAGTTTGCCGGAGAGGTTTTTTGCTGG
AAATTTTAGCAAAGAAAGACAGCTTAAAGATGCTCATAATTATGGAAGAC
GAGAATGACGACGAAGATGGAAGAAAACTTACAATGGCATTGGATGACCT
GTTTGTTGAACTTGAATTGGATGCTTCCAACAGCATAGCTGAAATTTTTC
AAAGAATACTTGGAACTTTATTAAGTCTGCAACGTGAGATCTTGAGGCTC
AATTCTTCAGACCAGACTTAGCTCGCTGTAGTTCTTTTCAAGATGTTTTT
GAAAAATTTGCAAGGAAAAAATTGGTCCCGACACCTGAGTGTTACAAAGA
AAATACAATATGGCAGGATTGTTTTCTCAAAATCATGGATGGAAGTTTGC
CGGAGAGGTTTTTTGCTGGAAATTTTAGCAAAGAAAGACAGCTTAAAGAT
GCTCATAATTATGGAAGACGAGAATGACGACGAAGATGGAAGAAAACTTA
CAATGGCATTGGATGACCTGTTTGTTGAACTTGAATTGGATGCTTCCAAC
AGCATAGCTGAAATTTTTCAAAGAATACTTGGAACTTTATTAAGTCTGCA
ACGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037669-exon-sc0001684-1575043694:25479..25644 | TCONS_00037669-exon-sc0001684-1575043694:25479..25644 | Clytia hemisphaerica | exon |
| TCONS_00037669-exon-sc0001684-1575043694:25146..25236 | TCONS_00037669-exon-sc0001684-1575043694:25146..25236 | Clytia hemisphaerica | exon |
| TCONS_00037669-exon-sc0001684-1575043694:24822..24942 | TCONS_00037669-exon-sc0001684-1575043694:24822..24942 | Clytia hemisphaerica | exon |
| TCONS_00037669-exon-sc0001684-1510915933:25479..25644 | TCONS_00037669-exon-sc0001684-1510915933:25479..25644 | Clytia hemisphaerica | exon |
| TCONS_00037669-exon-sc0001684-1510915933:25146..25236 | TCONS_00037669-exon-sc0001684-1510915933:25146..25236 | Clytia hemisphaerica | exon |
| TCONS_00037669-exon-sc0001684-1510915933:24822..24942 | TCONS_00037669-exon-sc0001684-1510915933:24822..24942 | Clytia hemisphaerica | exon |
| TCONS_00037669-exon-sc0001684-1491911889:25479..25644 | TCONS_00037669-exon-sc0001684-1491911889:25479..25644 | Clytia hemisphaerica | exon |
| TCONS_00037669-exon-sc0001684-1491911889:25146..25236 | TCONS_00037669-exon-sc0001684-1491911889:25146..25236 | Clytia hemisphaerica | exon |
| TCONS_00037669-exon-sc0001684-1491911889:24822..24942 | TCONS_00037669-exon-sc0001684-1491911889:24822..24942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001684 | supercontig | sc0001684:24822..25644 - |
Blast
The following BLAST results are available for this feature:
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