TCONS_00037666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037666
Unique NameTCONS_00037666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037666 ID=TCONS_00037666|Name=TCONS_00037666|organism=Clytia hemisphaerica|type=transcript|length=807bp
CCAacattgaaatatttacaaaaagtaTATTCAAATGATCTCGGATCTAT
TTATGTTGGaacttttggtttaaatatGCCGTCTGTTAACTGCCCCGTCC
CTGACCCTGGGTGCACAACTATGCCACCCCAGACACAGAGGCAGTCATTG
TTCGCCCACGCCAATTCGACACATAACGGTCCAGCCCAAGCAGGTCAAGG
CACAACCAAGGTGGAGAAAGTCAAGCGCCCAACAATCGTATCTCCAACAC
CACCTGCTCGCTTGACTGAGCAGACACATCCATCAAAGAACCCCTCCGCA
GCACCTTCTTTCGACGGACCAACATCAACTTTGGATCCAACACCTACAAC
CAACGCGCAAGCTCCAGCTGAGCTCCAGCCTTACGACAAGATCAAGTCGT
ATTCGTAAACCTCCAAGCTACCTTAATGACTTTCAAACATGAACTTTCGT
TTGAACACNgggttgctagtaacggctcgaatttcagtcaggttaaaagt
cgatgtcggaatgagcaatagacaaccttcttttgagaccttgtaattat
tgcttccctggctaaagcttcagatgcatccggctggacttagaatattt
ttcaagttgaatagTGACCAAAGGGGGTCTCGAACCGGGAACCTATAGGT
TCCGAAACCAATGCCCTATCCACTAGGCCAAACCGGCTGCCGAAAATATG
TTATTTGGGGTAGTCCAGGGTCTGGAGCTCAactattttttgcctttgat
aatctgatggtggaaaaaatagAGAGTCCAGTGGAACCCACAAATTATGT
AACTGAA
Run BLAST on NCBI

protein sequence of TCONS_00037666-protein

>TCONS_00037666-protein ID=TCONS_00037666-protein|Name=TCONS_00037666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
PTLKYLQKVYSNDLGSIYVGTFGLNMPSVNCPVPDPGCTTMPPQTQRQSL
FAHANSTHNGPAQAGQGTTKVEKVKRPTIVSPTPPARLTEQTHPSKNPSA
APSFDGPTSTLDPTPTTNAQAPAELQPYDKIKSYS
Run BLAST on NCBI

transcript from alignment at sc0001680:34983..35789

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037666 ID=TCONS_00037666|Name=TCONS_00037666|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at sc0001680:34983..35789 (Clytia hemisphaerica)
TTCAGTTACATAATTTGTGGGTTCCACTGGACTCTctattttttccacca
tcagattatcaaaggcaaaaaatagtTGAGCTCCAGACCCTGGACTACCC
CAAATAACATATTTTCGGCAGCCGGTTTGGCCTAGTGGATAGGGCATTGG
TTTCGGAACCTATAGGTTCCCGGTTCGAGACCCCCTTTGGTCActattca
acttgaaaaatattctaagtccagccggatgcatctgaagctttagccag
ggaagcaataattacaaggtctcaaaagaaggttgtctattgctcattcc
gacatcgacttttaacctgactgaaattcgagccgttactagcaacccNG
TGTTCAAACGAAAGTTCATGTTTGAAAGTCATTAAGGTAGCTTGGAGGTT
TACGAATACGACTTGATCTTGTCGTAAGGCTGGAGCTCAGCTGGAGCTTG
CGCGTTGGTTGTAGGTGTTGGATCCAAAGTTGATGTTGGTCCGTCGAAAG
AAGGTGCTGCGGAGGGGTTCTTTGATGGATGTGTCTGCTCAGTCAAGCGA
GCAGGTGGTGTTGGAGATACGATTGTTGGGCGCTTGACTTTCTCCACCTT
GGTTGTGCCTTGACCTGCTTGGGCTGGACCGTTATGTGTCGAATTGGCGT
GGGCGAACAATGACTGCCTCTGTGTCTGGGGTGGCATAGTTGTGCACCCA
GGGTCAGGGACGGGGCAGTTAACAGACGGCatatttaaaccaaaagttCC
AACATAAATAGATCCGAGATCATTTGAATAtactttttgtaaatatttca
atgtTGG

Coding sequence (CDS) from alignment at sc0001680:34983..35789

>TCONS_00037666 ID=TCONS_00037666|Name=TCONS_00037666|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0001680:34983..35789 (Clytia hemisphaerica)
TTACGAATACGACTTGATCTTGTCGTAAGGCTGGAGCTCAGCTGGAGCTT
GCGCGTTGGTTGTAGGTGTTGGATCCAAAGTTGATGTTGGTCCGTCGAAA
GAAGGTGCTGCGGAGGGGTTCTTTGATGGATGTGTCTGCTCAGTCAAGCG
AGCAGGTGGTGTTGGAGATACGATTGTTGGGCGCTTGACTTTCTCCACCT
TGGTTGTGCCTTGACCTGCTTGGGCTGGACCGTTATGTGTCGAATTGGCG
TGGGCGAACAATGACTGCCTCTGTGTCTGGGGTGGCATAGTTGTGCACCC
AGGGTCAGGGACGGGGCAGTTAACAGACGGCatatttaaaccaaaagttC
CAACATAAATAGATCCGAGATCATTTGAATAtactttttgtaaatatttc
aatgtTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022412XLOC_022412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037666-exon-sc0001680-1491911889:34983..35789TCONS_00037666-exon-sc0001680-1491911889:34983..35789Clytia hemisphaericaexon
TCONS_00037666-exon-sc0001680-1510915933:34983..35789TCONS_00037666-exon-sc0001680-1510915933:34983..35789Clytia hemisphaericaexon
TCONS_00037666-exon-sc0001680-1575043694:34983..35789TCONS_00037666-exon-sc0001680-1575043694:34983..35789Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037666-proteinTCONS_00037666-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001680supercontigsc0001680:34983..35789 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.478715	0.837579	0.566297	0.948638	4.18239	2.21978	1.24525	1.86852	1.69866	0.911678	1.52641	1.60329	1.66525	1.91806	1.22392	0.584097	1.15624	0.92045	1.26235	1.5942	1.23406	1.76827	0.420889	0.63684	0.84018	1.12496	1.17766	1.39249	0.895026	1.15825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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