TCONS_00037657 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00037657
Unique Name	TCONS_00037657
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	828

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001678:17996..22453-

transcript sequence

>TCONS_00037657 ID=TCONS_00037657|Name=TCONS_00037657|organism=Clytia hemisphaerica|type=transcript|length=828bp
ACAAGTTTTGGGAATAAGAAAGCTCATAAGCAGATAGACTTGACTTACCA
TCTTTGACATCTTCTAAAATGACTGCCTCCGCTAAGCGTTGTCCTTTTGA
AAATGTTCTATGAACGCACCACACATGTGAGCTGAAATATAAGTGGATTT
GCTCGAGGAATGTTTTGTGTATaaaaattttttgtgattttttatgcCCA
ATTTAGTGAATCGTGAAATTTAGTACacgcaaaaatttccaccctaGTAA
AATTTTGCGAATCGTAACCCGCAAAATATAATACCAGTAAGGTAATTCAA
TATTTTGTATCAAGAAGTTCACTTACCCAGGTTTCATGTTGAAATCAGGT
GGCATTTGTTGTACTATTGTCTTTGGATCCTCCATGATCAATTCTTTCTT
TGCTTCACTCACGCTCTAAATTTAAAAGGTCATGATAAAgcatttgtaat
ttggtaagaaatatcttttaaacTACCTTTAGAGGAATTAATATTACAGA
ACAAAGGAGATCAGATTGTAGAAAGATGTAAATGGGAACTACATACATGA
AGGGGACATGTTGCTTTCGGTTAACGATTCTTCCAAATCGTGATTTGGCT
CTTCTTCTTCTAAGAGATAAATTTAGACATTATGTAAATTGCAGCTGTCA
AGCAAAATCGGCGTTAACAGCTCCAGATGTAAAATGATGTATCTGGTTCA
CTTATTCAACtgCAAGTATCGTTACCTTTTGGGTTTGCCTTTTGATGGTT
TCCAGGTGTCGTCACTTAAAAAGTaggtttaatgtttttttttaattata
aggTGTGAGCTttcatttaagattttaa

Run BLAST on NCBI

transcript from alignment at sc0001678:17996..22453-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00037657 ID=TCONS_00037657|Name=TCONS_00037657|organism=Clytia hemisphaerica|type=transcript|length=4458bp|location=Sequence derived from alignment at sc0001678:17996..22453- (Clytia hemisphaerica)
ACAAGTTTTGGGAATAAGAAAGCTCATAAGCAGATAGACTTGACTTACCA
TCTTTGACATCTTCTAAAATGACTGCCTCCGCTAAGCGTTGTCCTTTTGA
AAATGTTCTATGAACGCACCACACATGTGAGCTGAAATATAAGTGGATTT
GCTCGAGGAATGTTTTGTGTATAAAAATTTTTTGTGATTTTTTATGCCCA
ATTTAGTGAATCGTGAAATTTAGTACACGCAAAAATTTCCACCCTAGTAA
AATTTTGCGAATCGTAACCCGCAAAATATAATACCAGTAAGGTAATTCAA
TATTTTGTATCAAGAAGTTCACTTACCCAGGTTTCATGTTGAAATCAGGT
GGCATTTGTTGTACTATTGTCTTTGGATCCTCCATGATCAATTCTTTCTT
TGCTTCACTCACGCTCTAAATTTAAAAGGTCATGATAAAGCATTTGTAAT
TTGGTAAGAAATATCTTTTAAACTACCTTTAGAGGAATTAATATTACAGA
ACAAAGGAGATCAGATTGTAGAAAGATGTAAATGGGAACTACATACATGA
AGGTACCCTCTATGGCCAGTCAAGATCTTTCTAATTTTAGACTTCAACAT
GGTCAACNTTACATGAAGGTACCCTCTATGGCCAGTCAAGATCTTTCTAA
TTTTCGACTTCAACATGGTCAATGATTTACTGCCATCTGTTGAAGTTACA
GCTTCTTTGAATAGCTGAAATTTAACATTTTGGTTCAAATATTAGTCAAT
AGAATTTTTTTTTTTTTATATCAAGGGGGACTAAATTATACACAGGAAAA
AATTATTGATTCCCTAGCCTAGGGATTGTTCATTTTCAGATGTGGTTTTT
TATTCGATCACATTAGTCTAGAATTTAAAGTTCTGGAAAGTAAGGAAACT
AGGGAAACCTATTTTCCCATGCTGGAAGTGTATTACCAATGTGTTAATGA
AAACGGATTTCCACATGTGGAAAACTAATATTTTTAACATTCTAGGTTGC
CCATTCAGAATTGCATCGGGAAATTAAAAATCCCAAGTTTTTCTAAACTG
ATTATGGATGAGTCGGGAAAAGAGAGATCACGAGTTTTGGAAATGATTAT
TTTCTACCCTACAAGCTAGGGAAAGGAAATATCACGAATTGTGACCTTCC
TTGCTTTATTCTTTTCTTTCTCTGGATCGGGAAATGTGATTTCTTGAATT
AGGGAAATAAAATGTCCCAGATTGGGAAATTCGATTTCCCAAACTCTTTA
ATTTGAGTGTATCCTTTAAAAAATAAATTAAATCAGAACTTATTTTTCAA
ACCTTCAAATAAGACAATTCAATCAAAAATTTTAAACTGTCAGAAATTAG
CGCCTAAGTTCGGGAAATTTTTTTTAGGTTAGGGAAAATTGATTTCCCTA
ACTTGTATTACGCATGCGTGAGAAAAAACCACAAGTGATCTTTCACTCAA
AAGTGTTTGAGTCGTATGTAAAGCAAACCATTATAAGGGTGTATTCGATC
AGTGTGTAACACAACGCTAAAGGTGAGGGGCCCCGCCAGGGCGGCCTCAT
TCGANAGTCGTATGTAAAGCAAACCATTATAAGGGTGTATTCGATCAGTG
TGTAACACAACGCTAAAGGTGAGGCGCCCCGCCAGGGCGGCCTCATTCGA
TCGCAATGGACTTGCGTCGCAAGGGCTCAGTGGATCGGTGAGACGGGTTT
GAGGTCATTAAGTTGGCTCTCTAGTGCAGCTCCACTGTTGTGACAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTCAATTCAAAAAGCTTTTAGGGATTATTTGAGGTAATTTGTAAAA
AACAGAATTTTCCAAACAGAAAGTTTAATTTAGTGTAAATCCAGGTAAAT
CGGTTCCAAAAAGGAAGACTTTAAATTGACAAAAAATCAGCTGTAGGATT
TTACCTTCTTTGACAATTGGTGTGAGTCCTGTCGAAGCCTGAGTGCTTGC
TGCTATAAGTAAATAATACATTCTTAAGTTAACCATACTGATTCTAATAA
CTTGAAAATCATTGAAAACTTATATAAACACAATGCTACTGCATGCTAAG
GACCGCTTGAGCTTTCTGCCTTAAAAAATATTTTAATTACCTTTGACCTT
AGGTGATAAAATGTTGAAATACATTTGTAGTAAAAAAACTAAGCATAATA
TTCCTACCTTCCTTTATAGGGGACATGTTGCTTTCGGTTAACGATTCTTC
CAAATCGTGATTTGGCTCTTCTTCTTCTAAGAGATAAATTTAGACATTAT
GTAAATTGCAGTAAGTATCATCTTCTATTTTATAACTCCGGACTCCAATG
AACATATAAAGATCAATATGACAGTGTTTATTCATTTGTGAACTGATCAA
AAGAGATCATTATCTTGTATTGATGAGCTTCTATTCTATTTCACCAGTTA
ATGTCAAATAATATGAATATGATATAAACTTATGGTCTACCCATACTCAA
CATCTAGTTCTAGTTTTATATTTGCATAAGACAAAAAATCTCCTTACCAT
CATTTTCAGTACGATACTCTCCATCACTGCTCAGCTCATCTGTATGTAGA
AAAAAAAATTGCTTTATTGTAACATTTTCAGGGGTGACTTTCAATATTAC
TGTATTGGTTTTATAGGCTGTCAAGCAAAATCGGCGTTAACAGCTCCAGA
TGTAAAATGATGTATCTGGTTCACTTATTCAACGTAAGTTAAGTCCTATT
GTTTATGATGTTTGGAAAATTTAATTAATAGAACTAGAAATTAAAAAAAC
ATTCGATCCTCAAAGCCTGAGTTCTAGATGAGTAAAGATAGTTTAGATAG
TTAAAACATGACTTACGTCGAAATACATGGTCATCATTAACTTTCAAAAA
CTCTACATCATCTTCAAACACCAAATCTGTTAAATTGTCTGAAAAAAAAT
GATTTAAATGATATTATAAAAAATATGAAACAAAAATATTAAGGCTGGTT
TTGATTTTTTACCCAACCCCTATCAACTTGTTTACATATTTCAATTTCTT
TAACAATTAAATTGTATTTAAATTTTCTTAAAATTTTCAGTGCAAGTATC
GTTACCTTTTGGGTTTGCCTTTTGATGGTTTCCAGGTGTCGTCACTTAAA
AAGTAGGTTTAATGTTTTTTTTTAATTATAAGGTGTGAGCTTTCATTTAA
GATTTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_022405	XLOC_022405	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00037657-exon-sc0001678-1575043694:21902..22453	TCONS_00037657-exon-sc0001678-1575043694:21902..22453	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1575043694:18894..18984	TCONS_00037657-exon-sc0001678-1575043694:18894..18984	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1575043694:18471..18537	TCONS_00037657-exon-sc0001678-1575043694:18471..18537	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1575043694:17996..18113	TCONS_00037657-exon-sc0001678-1575043694:17996..18113	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1510915933:21902..22453	TCONS_00037657-exon-sc0001678-1510915933:21902..22453	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1510915933:18894..18984	TCONS_00037657-exon-sc0001678-1510915933:18894..18984	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1510915933:18471..18537	TCONS_00037657-exon-sc0001678-1510915933:18471..18537	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1510915933:17996..18113	TCONS_00037657-exon-sc0001678-1510915933:17996..18113	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1491911889:21902..22453	TCONS_00037657-exon-sc0001678-1491911889:21902..22453	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1491911889:18894..18984	TCONS_00037657-exon-sc0001678-1491911889:18894..18984	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1491911889:18471..18537	TCONS_00037657-exon-sc0001678-1491911889:18471..18537	Clytia hemisphaerica	exon
TCONS_00037657-exon-sc0001678-1491911889:17996..18113	TCONS_00037657-exon-sc0001678-1491911889:17996..18113	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001678	supercontig	sc0001678:17996..22453 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0763424	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00037657 vs. Swiss-Prot (Human)

BLAST of TCONS_00037657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00037657 (transcript) - C. hemisphaerica