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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037654 ID=TCONS_00037654|Name=TCONS_00037654|organism=Clytia hemisphaerica|type=transcript|length=737bp
tatttttagttaaaatttgaattatgatatgcattaactttttaattttt
tttttgaaaattctttttacactttttatagtattttttaattatacaat
ttatatttttttatatttttatataaatcaACTCATcaatttatacaaaa
tttagagttacaaaattaacaaaatgaacAATACAAATAAAAGCCCTGGA
CTAAAACTATGTTGGACTGGACTGGAATGTTATTTGCGTGTTAATCGTTC
TGCTGTAACTAAAATTATATGCTTTgctggagaaaatatatggGCATTTG
TATGATATGATGCTGGTAATTTGTTAATGGTTTTGTTGTAGTATTAATTC
CTGTTACGTAATACTGTTGGTAGAATGAGGCAacctaaaagaaaagaaac
aaatttttaattcattGGCAACTTGGAATAAACATTGATTTCACACCACC
AAATTCAGCAACTCTAGATGCTACAAAAGTCACAAAAACAAGAGATATCA
ATCAACGATCAATTGTCATTTGGCTGTCATGACTCGTAAACATTTGTCAC
TGTGTTACTCCGAACTCAAAGTCGATGCTACAAAGTACATTCAGATTATA
TACGATCAACAACAACATTTCAATCAATCGGTATGCTGTTCATGTCAAAT
TGTCGTCAAAGAAAAACCGACTGACGACCATTTAAATTTTGTTCATAATA
GAGTTATTTGTTgctgattttgaaattcatAACGTTT Run BLAST on NCBI transcript from alignment at sc0001678:289..1559+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037654 ID=TCONS_00037654|Name=TCONS_00037654|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at sc0001678:289..1559+ (Clytia hemisphaerica)
tatttttagttaaaatttgaattatgatatgcattaactttttaattttt
tttttgaaaattctttttacactttttatagtattttttaattatacaat
ttatatttttttatatttttatataaatcaACTCATcaatttatacaaaa
tttagagttacaaaattaacaaaatgaacAATACAAATAAAAGCCCTGGA
CTAAAACTATGTTGGACTGGACTGGAATGTTATTTGCGTGTTAATCGTTC
TGCTGTAACTAAAATTATATGCTTTgctggagaaaatatatggGCATTTG
TATGATATGATGCTGGTAATTTGTTAATGGTTTTGTTGTAGTATTAATTC
CTGTTACGTAATACTGTTGGTAGAATGAGGCAacctaaaagaaaagaaac
aaatttttaattcattGGCAACTTGGAATAAACATTGATTTCACACCACC
AAATTCAGCAACTCTAGATGCTACAAAAGTCACAAAAACAAGAGGTTAGT
AAGACTTGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAGATGCTACAAAAGTCACAAAAACAAGAGGTTAGTAAGAC
TTGATAAACTTTGAGAGAATACTACTCGAGTACTATACTTCAAAGTCACA
ATTTATGATTCTCTgctcaaaaaaattgacaaataggTATATTCTTAACA
ATCGTTGGTATTTTTACAGACAATTGGTATAAAAGCTATTGAAGTGGTTA
TCAATTTATGAAAAGAAGTAATTTATCACACGTTTTCtctgaaaagaaaa
tacaaataaatacaTCGGGGTGTTTAGTGCTttacttttaattttatatt
ttactctGTTATTTTAGATATCAATCAACGATCAATTGTCATTTGGCTGT
CATGACTCGTAAACATTTGTCACTGTGTTACTCCGAACTCAAAGTCGATG
CTACAAAGTACATTCAGGTAATTTAATTAAACCttacaaaacatttaaaa
acctgaaggctttttttctattttcttaatTAAGAAACTGTCACATTTGC
TGAATGTCTCCATTCACCAAATAACTTAGAAAGTTTATATCATcagcttt
tatttttattttttgttttctctacCAGATTATATACGATCAACAACAAC
ATTTCAATCAATCGGTATGCTGTTCATGTCAAATTGTCGTCAAAGAAAAA
CCGACTGACGACCATTTAAATTTTGTTCATAATAGAGTTATTTGTTgctg
attttgaaattcatAACGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037654-exon-sc0001678-1491911889:289..782 | TCONS_00037654-exon-sc0001678-1491911889:289..782 | Clytia hemisphaerica | exon |
| TCONS_00037654-exon-sc0001678-1510915933:289..782 | TCONS_00037654-exon-sc0001678-1510915933:289..782 | Clytia hemisphaerica | exon |
| TCONS_00037654-exon-sc0001678-1575043694:289..782 | TCONS_00037654-exon-sc0001678-1575043694:289..782 | Clytia hemisphaerica | exon |
| TCONS_00037654-exon-sc0001678-1491911889:1156..1255 | TCONS_00037654-exon-sc0001678-1491911889:1156..1255 | Clytia hemisphaerica | exon |
| TCONS_00037654-exon-sc0001678-1510915933:1156..1255 | TCONS_00037654-exon-sc0001678-1510915933:1156..1255 | Clytia hemisphaerica | exon |
| TCONS_00037654-exon-sc0001678-1575043694:1156..1255 | TCONS_00037654-exon-sc0001678-1575043694:1156..1255 | Clytia hemisphaerica | exon |
| TCONS_00037654-exon-sc0001678-1491911889:1417..1559 | TCONS_00037654-exon-sc0001678-1491911889:1417..1559 | Clytia hemisphaerica | exon |
| TCONS_00037654-exon-sc0001678-1510915933:1417..1559 | TCONS_00037654-exon-sc0001678-1510915933:1417..1559 | Clytia hemisphaerica | exon |
| TCONS_00037654-exon-sc0001678-1575043694:1417..1559 | TCONS_00037654-exon-sc0001678-1575043694:1417..1559 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001678 | supercontig | sc0001678:289..1559 + |
Blast
The following BLAST results are available for this feature:
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