TCONS_00037647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037647
Unique NameTCONS_00037647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037647 ID=TCONS_00037647|Name=TCONS_00037647|organism=Clytia hemisphaerica|type=transcript|length=758bp
CTCTTTCCCCTTCCTCATTGTGTCTGTCTCCTTTTTCTTACACAGAATTG
ACATGTCAGTTTCATTGAAGGTTTTCCTCTCCTTTTTTAGGTATTGTTCA
TTAAGTTGTTTatattaattttcaattttggcaaagttttttagccattt
ttgtCATAAAATTCCATCTTGTGTCCGAACATGAAAGAAATATTAGTACA
GAGTCGCAttgaagaaaacaatttttttaacaatcatCAGATACTGCACT
TAGGAAACTGATACACTAAAAGCTTgcatcatgaatatttttaaggcttt
acagtAGAATATCATTCACATGTTTCAATTtatattcaaataaaatttgt
ttttgtttttgttgagaAGGCTTGTTAAACATAGAGGTTTTCGTAGTTCT
AGTagttttataatattttaactTATCATGTTTCTAACCCATGAAAGCTC
TTAGCAAGGTTTGGTTCTGTAGTTCTTCTAGATTGGTGATTCTGAGGAAT
TTTGAATGTTTCTTTCTTTGTAAAGTTCATAAATGCATATATATATGATC
TTTTATTAGCTATTTTGCTGAATCCAAAATACTTTATTTCGTCAATATCC
TATTTTCtttgctatttttatttttatcgttAAATGGATTTTGAGGtgat
gatttttcatttttatcataaaatCTTTTGAGATGATAATAATAgttgaa
ttttttaaagtttttaaatttaaagtttCATCAATTGAATATACTGTCAA
atattttt
Run BLAST on NCBI

transcript from alignment at sc0001673:23834..24591

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037647 ID=TCONS_00037647|Name=TCONS_00037647|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at sc0001673:23834..24591 (Clytia hemisphaerica)
aaaaatatTTGACAGTATATTCAATTGATGaaactttaaatttaaaaact
ttaaaaaattcaacTATTATTATCATCTCAAAAGattttatgataaaaat
gaaaaatcatcaCCTCAAAATCCATTTaacgataaaaataaaaatagcaa
aGAAAATAGGATATTGACGAAATAAAGTATTTTGGATTCAGCAAAATAGC
TAATAAAAGATCATATATATATGCATTTATGAACTTTACAAAGAAAGAAA
CATTCAAAATTCCTCAGAATCACCAATCTAGAAGAACTACAGAACCAAAC
CTTGCTAAGAGCTTTCATGGGTTAGAAACATGATAagttaaaatattata
aaactACTAGAACTACGAAAACCTCTATGTTTAACAAGCCTtctcaacaa
aaacaaaaacaaattttatttgaatataAATTGAAACATGTGAATGATAT
TCTactgtaaagccttaaaaatattcatgatgcAAGCTTTTAGTGTATCA
GTTTCCTAAGTGCAGTATCTGatgattgttaaaaaaattgttttcttcaa
TGCGACTCTGTACTAATATTTCTTTCATGTTCGGACACAAGATGGAATTT
TATGacaaaaatggctaaaaaactttgccaaaattgaaaattaatatAAA
CAACTTAATGAACAATACCTAAAAAAGGAGAGGAAAACCTTCAATGAAAC
TGACATGTCAATTCTGTGTAAGAAAAAGGAGACAGACACAATGAGGAAGG
GGAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022396XLOC_022396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037647-exon-sc0001673-1491911889:23834..24591TCONS_00037647-exon-sc0001673-1491911889:23834..24591Clytia hemisphaericaexon
TCONS_00037647-exon-sc0001673-1510915933:23834..24591TCONS_00037647-exon-sc0001673-1510915933:23834..24591Clytia hemisphaericaexon
TCONS_00037647-exon-sc0001673-1575043694:23834..24591TCONS_00037647-exon-sc0001673-1575043694:23834..24591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001673supercontigsc0001673:23834..24591 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.323112	0.0630171	0.0731689	0	0.087147	0.0688648	0.0830824	0.233342	0.326737	0.404716	0.785655	0.430382	0.300849	0.317073	0.220169	0.630066	0.485119	0.298339	0	0.0718845	0.766038	0.901258	0.337443	0.803691	0.070769	0	0.354441	0.567403	1.00635	1.12872
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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