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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037640 ID=TCONS_00037640|Name=TCONS_00037640|organism=Clytia hemisphaerica|type=transcript|length=1492bp
GAAAATATGAACGCTTGGGGAGTTGattgactgaaaaaaaagaagaggaa
aAATCACTCACAGGACAGCTTGTAGGATTTGATGATCTTTACAAACCCTT
GTTGATTTATAATCAAAAAGGATAGTCCAGTAGGAGGTTGTGTCGTCATC
TGGTGCCCCTGTTGTCATCCGAAGGTGGCCTGGTTGAACTTCATTATCAC
CATCTGGTACTTCAAACGCTGTAAAAATGAGAAATTGAAAGACATTTAAC
GTATGCAACAGGGGGTGGAACCCTAATAAGCCAAAGGAAAAGTATTTAAA
TACTAATGAAACGACATAGTATTATTAAATCGAATCGAatctaaaaattg
tttgatcTAGTTTTCAACGACCGTAGGTTGAAGGTTTCACATAATTTGGA
CTTTGTAAGACAGGAGAATCGAAATCGGATGAAAAAAACGATGGAAATAT
TATTTATTACCGGTATTGCTTTATATTCCATAGCAATTTTTTGTCATTTC
ATTGCCATATATTTCTTGATCCATTTCAAGTCGAACTCCCTGTGTTCAAA
GAACCAGAGGATATGTTTAttaaatttatgtttttgtGAACTCCTGCTCT
CTGTTATCGGTATCGCTGGCAAATTAATTTACATTTTCGAATGCGAGACA
GTGGCACAATGGGTTTTATTATGGCAAGATGGATTCTTAAATGTTTGGTA
TATTTGTACCATGACCTTTATAACTTTCGATCGATTTCTTGTGGTACATT
ATAACTTGAGGTATGACGTATACTGGTCTACTACAAAGACCAAGATTGGG
TTGATCATAATCGCTATTATATCATTACAAGTTATGCTGATATTACATGT
TATACCAAGTACGATACATCAGAAGTTTCATATTATTTTCATGTACATTT
GGCCCATATTCGATGGTATTTTTCTTCTTGTGGCAATCATAACGTATATC
TACTTGTATCGCCGTATCAAACAGAATCACGTTTACGAACGTAATCAATT
AAAAAGCTTACGCACCAACGCAAGACGTAAAAGTTCAGTATGTTTCAAGA
AAATCAAGCATGGTTTCTACATGCCCACGTTCTTGATTTTGTCTTTCATT
TTCACGTGGGCGATACCAGACATGATCCTAACTGGACGCTTTATGTACGA
GCATACGATTGATGAGCAATTTCACGCCAAGATTGCAATTGTGTATCCAG
TGGGGTTGATATTTGATGCTTTTTTGTATATCTTGTTACCCTACTCTGAT
GTCATCCATAAAATATTCACAAGATCTCGTATTAAAAACTAAAAACGAAA
GAATATTATAGTCAATGTAATACTGAATGGGGATATATGAGCAAAAATGA
CAAACCTATattgaaaaacattattttcctttataaaatacataaaaaac
tGCTCAGCCCAGTTTTGAAGTCGACTAGTCCGCCATGCTGTTTTCTAATT
TAACTGAGATTTTCAAACGTTCAAATTACGCTGTTGAcgacc Run BLAST on NCBI protein sequence of TCONS_00037640-protein >TCONS_00037640-protein ID=TCONS_00037640-protein|Name=TCONS_00037640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MKKTMEILFITGIALYSIAIFCHFIAIYFLIHFKSNSLCSKNQRICLLNL
CFCELLLSVIGIAGKLIYIFECETVAQWVLLWQDGFLNVWYICTMTFITF
DRFLVVHYNLRYDVYWSTTKTKIGLIIIAIISLQVMLILHVIPSTIHQKF
HIIFMYIWPIFDGIFLLVAIITYIYLYRRIKQNHVYERNQLKSLRTNARR
KSSVCFKKIKHGFYMPTFLILSFIFTWAIPDMILTGRFMYEHTIDEQFHA
KIAIVYPVGLIFDAFLYILLPYSDVIHKIFTRSRIKN Run BLAST on NCBI transcript from alignment at sc0001671:18935..20426 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037640 ID=TCONS_00037640|Name=TCONS_00037640|organism=Clytia hemisphaerica|type=transcript|length=1492bp|location=Sequence derived from alignment at sc0001671:18935..20426 (Clytia hemisphaerica)
ggtcgTCAACAGCGTAATTTGAACGTTTGAAAATCTCAGTTAAATTAGAA
AACAGCATGGCGGACTAGTCGACTTCAAAACTGGGCTGAGCagtttttta
tgtattttataaaggaaaataatgtttttcaatATAGGTTTGTCATTTTT
GCTCATATATCCCCATTCAGTATTACATTGACTATAATATTCTTTCGTTT
TTAGTTTTTAATACGAGATCTTGTGAATATTTTATGGATGACATCAGAGT
AGGGTAACAAGATATACAAAAAAGCATCAAATATCAACCCCACTGGATAC
ACAATTGCAATCTTGGCGTGAAATTGCTCATCAATCGTATGCTCGTACAT
AAAGCGTCCAGTTAGGATCATGTCTGGTATCGCCCACGTGAAAATGAAAG
ACAAAATCAAGAACGTGGGCATGTAGAAACCATGCTTGATTTTCTTGAAA
CATACTGAACTTTTACGTCTTGCGTTGGTGCGTAAGCTTTTTAATTGATT
ACGTTCGTAAACGTGATTCTGTTTGATACGGCGATACAAGTAGATATACG
TTATGATTGCCACAAGAAGAAAAATACCATCGAATATGGGCCAAATGTAC
ATGAAAATAATATGAAACTTCTGATGTATCGTACTTGGTATAACATGTAA
TATCAGCATAACTTGTAATGATATAATAGCGATTATGATCAACCCAATCT
TGGTCTTTGTAGTAGACCAGTATACGTCATACCTCAAGTTATAATGTACC
ACAAGAAATCGATCGAAAGTTATAAAGGTCATGGTACAAATATACCAAAC
ATTTAAGAATCCATCTTGCCATAATAAAACCCATTGTGCCACTGTCTCGC
ATTCGAAAATGTAAATTAATTTGCCAGCGATACCGATAACAGAGAGCAGG
AGTTCacaaaaacataaatttaaTAAACATATCCTCTGGTTCTTTGAACA
CAGGGAGTTCGACTTGAAATGGATCAAGAAATATATGGCAATGAAATGAC
AAAAAATTGCTATGGAATATAAAGCAATACCGGTAATAAATAATATTTCC
ATCGTTTTTTTCATCCGATTTCGATTCTCCTGTCTTACAAAGTCCAAATT
ATGTGAAACCTTCAACCTACGGTCGTTGAAAACTAgatcaaacaattttt
agatTCGATTCGATTTAATAATACTATGTCGTTTCATTAGTATTTAAATA
CTTTTCCTTTGGCTTATTAGGGTTCCACCCCCTGTTGCATACGTTAAATG
TCTTTCAATTTCTCATTTTTACAGCGTTTGAAGTACCAGATGGTGATAAT
GAAGTTCAACCAGGCCACCTTCGGATGACAACAGGGGCACCAGATGACGA
CACAACCTCCTACTGGACTATCCTTTTTGATTATAAATCAACAAGGGTTT
GTAAAGATCATCAAATCCTACAAGCTGTCCTGTGAGTGATTtttcctctt
cttttttttcagtcaatCAACTCCCCAAGCGTTCATATTTTC Coding sequence (CDS) from alignment at sc0001671:18935..20426 >TCONS_00037640 ID=TCONS_00037640|Name=TCONS_00037640|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0001671:18935..20426 (Clytia hemisphaerica)
TTAGTTTTTAATACGAGATCTTGTGAATATTTTATGGATGACATCAGAGT
AGGGTAACAAGATATACAAAAAAGCATCAAATATCAACCCCACTGGATAC
ACAATTGCAATCTTGGCGTGAAATTGCTCATCAATCGTATGCTCGTACAT
AAAGCGTCCAGTTAGGATCATGTCTGGTATCGCCCACGTGAAAATGAAAG
ACAAAATCAAGAACGTGGGCATGTAGAAACCATGCTTGATTTTCTTGAAA
CATACTGAACTTTTACGTCTTGCGTTGGTGCGTAAGCTTTTTAATTGATT
ACGTTCGTAAACGTGATTCTGTTTGATACGGCGATACAAGTAGATATACG
TTATGATTGCCACAAGAAGAAAAATACCATCGAATATGGGCCAAATGTAC
ATGAAAATAATATGAAACTTCTGATGTATCGTACTTGGTATAACATGTAA
TATCAGCATAACTTGTAATGATATAATAGCGATTATGATCAACCCAATCT
TGGTCTTTGTAGTAGACCAGTATACGTCATACCTCAAGTTATAATGTACC
ACAAGAAATCGATCGAAAGTTATAAAGGTCATGGTACAAATATACCAAAC
ATTTAAGAATCCATCTTGCCATAATAAAACCCATTGTGCCACTGTCTCGC
ATTCGAAAATGTAAATTAATTTGCCAGCGATACCGATAACAGAGAGCAGG
AGTTCacaaaaacataaatttaaTAAACATATCCTCTGGTTCTTTGAACA
CAGGGAGTTCGACTTGAAATGGATCAAGAAATATATGGCAATGAAATGAC
AAAAAATTGCTATGGAATATAAAGCAATACCGGTAATAAATAATATTTCC
ATCGTTTTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037640-exon-sc0001671-1491911889:18935..20426 | TCONS_00037640-exon-sc0001671-1491911889:18935..20426 | Clytia hemisphaerica | exon |
| TCONS_00037640-exon-sc0001671-1510915933:18935..20426 | TCONS_00037640-exon-sc0001671-1510915933:18935..20426 | Clytia hemisphaerica | exon |
| TCONS_00037640-exon-sc0001671-1575043694:18935..20426 | TCONS_00037640-exon-sc0001671-1575043694:18935..20426 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001671 | supercontig | sc0001671:18935..20426 . |
Blast
The following BLAST results are available for this feature:
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