TCONS_00037630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037630
Unique NameTCONS_00037630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037630 ID=TCONS_00037630|Name=TCONS_00037630|organism=Clytia hemisphaerica|type=transcript|length=713bp
ACCTAGCataataattaaaaatatttaaaataaagataaagggaCTACAA
ACTcactaaaatagaaaatctatttcaaaatacTAATCAATAGTTTATCC
GTTTCCCATCAGCCTTGATAATGGCTTTAATTCGATGCGGCATGCTTTCA
ATTATGTCATTGATTTTCTTCACGGGAAAATTGAACAAAGTCTCTTTTAT
GCACGCCTCAAATTCCTCTTTATTTTCCGATGTAATCTTTCGTTCGATTG
CTTGCAAAAACGTTCTCAATACAATTGATGTCTGGACTTCTAGAAGGGAT
CCTCATTTGTTTAGANACGTTCTCAATACAATTGATGTCTGGACTTCTAG
AAGGGATCCTCATTTGTTTAGAATTTATATCGTATAGTGCAGCTCTAGCA
ATTTTAGATTGCTGTCTTGGACAGTTGTCTTGAACAATGCGTTTTCCTTT
GGGGTCAGTCGACTTCTTTAGTGCGGctgggaaatattttttgatgatgt
tTGCATACTTCTCACCCGTAATAGTACCATAGTACCTTTCGCATAAAACA
ACGCCTTTGTTATAGGAGATACTAACTATGAAATTTAAATTGGTAACTCC
AGCTTTTCCAGCTTTCGCCGTGCAACCAAATTCTAGTCCCTCATTTGGCA
ATCTCCAAAGTCTGGCCTTCAGAGCACGGGCCTGGTCAAGGGGATTTTGC
TTCCAAGCAAATC
Run BLAST on NCBI

protein sequence of TCONS_00037630-protein

>TCONS_00037630-protein ID=TCONS_00037630-protein|Name=TCONS_00037630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
FAWKQNPLDQARALKARLWRLPNEGLEFGCTAKAGKAGVTNLNFIVSISY
NKGVVLCERYYGTITGEKYANIIKKYFPAALKKSTDPKGKRIVQDNCPRQ
QSKIARAALYDINSKQMRIPSRSPDINCIENXSKQMRIPSRSPDINCIEN
VFASNRTKDYIGK
Run BLAST on NCBI

transcript from alignment at sc0001668:45494..46206

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037630 ID=TCONS_00037630|Name=TCONS_00037630|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0001668:45494..46206 (Clytia hemisphaerica)
GATTTGCTTGGAAGCAAAATCCCCTTGACCAGGCCCGTGCTCTGAAGGCC
AGACTTTGGAGATTGCCAAATGAGGGACTAGAATTTGGTTGCACGGCGAA
AGCTGGAAAAGCTGGAGTTACCAATTTAAATTTCATAGTTAGTATCTCCT
ATAACAAAGGCGTTGTTTTATGCGAAAGGTACTATGGTACTATTACGGGT
GAGAAGTATGCAaacatcatcaaaaaatatttcccagCCGCACTAAAGAA
GTCGACTGACCCCAAAGGAAAACGCATTGTTCAAGACAACTGTCCAAGAC
AGCAATCTAAAATTGCTAGAGCTGCACTATACGATATAAATTCTAAACAA
ATGAGGATCCCTTCTAGAAGTCCAGACATCAATTGTATTGAGAACGTNTC
TAAACAAATGAGGATCCCTTCTAGAAGTCCAGACATCAATTGTATTGAGA
ACGTTTTTGCAAGCAATCGAACGAAAGATTACATCGGAAAATAAAGAGGA
ATTTGAGGCGTGCATAAAAGAGACTTTGTTCAATTTTCCCGTGAAGAAAA
TCAATGACATAATTGAAAGCATGCCGCATCGAATTAAAGCCATTATCAAG
GCTGATGGGAAACGGATAAACTATTGATTAgtattttgaaatagattttc
tattttagtgAGTTTGTAGtccctttatctttattttaaatatttttaat
tattatGCTAGGT

Coding sequence (CDS) from alignment at sc0001668:45494..46206

>TCONS_00037630 ID=TCONS_00037630|Name=TCONS_00037630|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0001668:45494..46206 (Clytia hemisphaerica)
TTTGCTTGGAAGCAAAATCCCCTTGACCAGGCCCGTGCTCTGAAGGCCAG
ACTTTGGAGATTGCCAAATGAGGGACTAGAATTTGGTTGCACGGCGAAAG
CTGGAAAAGCTGGAGTTACCAATTTAAATTTCATAGTTAGTATCTCCTAT
AACAAAGGCGTTGTTTTATGCGAAAGGTACTATGGTACTATTACGGGTGA
GAAGTATGCAaacatcatcaaaaaatatttcccagCCGCACTAAAGAAGT
CGACTGACCCCAAAGGAAAACGCATTGTTCAAGACAACTGTCCAAGACAG
CAATCTAAAATTGCTAGAGCTGCACTATACGATATAAATTCTAAACAAAT
GAGGATCCCTTCTAGAAGTCCAGACATCAATTGTATTGAGAACGTNTCTA
AACAAATGAGGATCCCTTCTAGAAGTCCAGACATCAATTGTATTGAGAAC
GTTTTTGCAAGCAATCGAACGAAAGATTACATCGGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022380XLOC_022380Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037630-proteinTCONS_00037630-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037630-exon-sc0001668-1491911889:45494..46206TCONS_00037630-exon-sc0001668-1491911889:45494..46206Clytia hemisphaericaexon
TCONS_00037630-exon-sc0001668-1510915933:45494..46206TCONS_00037630-exon-sc0001668-1510915933:45494..46206Clytia hemisphaericaexon
TCONS_00037630-exon-sc0001668-1575043694:45494..46206TCONS_00037630-exon-sc0001668-1575043694:45494..46206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001668supercontigsc0001668:45494..46206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.155952	2.18334	1.27523	0.905005	1.18616	1.24568	0.955178	0.427901	0.937618	0.795868	0.34033	0.399711	0.343161	0.31706	0.758277	0.0748286	0	0.204178	0.199182	0.161421	0.29351	0.151154	0.539606	0.579131	0.103011	0.07813	0.159204
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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