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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037612 ID=TCONS_00037612|Name=TCONS_00037612|organism=Clytia hemisphaerica|type=transcript|length=873bp
ATCTACAGTGACCATGACCTCTCCAGGAAGGGGAGATTAGTTtatattct
tctttcttttcatttagatCTAATGTATTACAAACAATATATTTAGATGT
GGCCTTAGTTGACTTAGTTGACGTTGACAAACGTGCTTGGCttcaaaaat
tcgaaacattaaTATCGTACGTTCACACCATCTGGTCTGATCCAATCGTG
ATTACAGGTAATACAAATATCGATCTCTTGAAAGGGAACTACAACGTTGC
TGACGAATATAAAGATACCCTCGATCGTCTCGGTTTACGTCAACAAGTGA
AGAAGCCAACCCGGAAGGGAAAAACCTGCATTGACCATATCATTACCTCA
TTCTCAAAAGTCATCCACGATGATGTTATCCCATGCGACGAAATGAGCGA
TCATGATGCTGCCTTCGTCATATGTAATCTACGCAAACCACGGTTTGAAC
CCAGatataaatttattcgaaatgAGAAAAACTTTGATTTAGCAGCATTT
AAAACAGATATCAGACAAATACCGTTCAATCTTGTCTACGCTTTTGATAC
CGCTGAAGAAAAACTAGACAtatttaacaaactttttacCGATTGTCTAG
ACCGACAGGCACCCCTCATCAGGCAGAAATTAACGTGCCCACCAGCTCCG
TGGTTAAAAGATCTCAACATCAGCGAGAAGCAAAAGGAAAGAGACTATTT
ACGAACCAAATGTCATTCCCCGCAGTCCGAGCAAAAAGATTGGGATCTGT
TTCGTAAAATCCGAAACGAATTAAAAACTCTTATTCGAGTAACAAAATCC
AGTTTTTACCGACGCGCACTATCCTCCAAAAGACCGAAAGAAGTATGGTC
AACCATCCATCGCATCCTGAAAC Run BLAST on NCBI protein sequence of TCONS_00037612-protein >TCONS_00037612-protein ID=TCONS_00037612-protein|Name=TCONS_00037612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MSDHDAAFVICNLRKPRFEPRYKFIRNEKNFDLAAFKTDIRQIPFNLVYA
FDTAEEKLDIFNKLFTDCLDRQAPLIRQKLTCPPAPWLKDLNISEKQKER
DYLRTKCHSPQSEQKDWDLFRKIRNELKTLIRVTKSSFYRRALSSKRPKE
VWSTIHRILK Run BLAST on NCBI transcript from alignment at sc0001666:2778..3650 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037612 ID=TCONS_00037612|Name=TCONS_00037612|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at sc0001666:2778..3650 (Clytia hemisphaerica)
GTTTCAGGATGCGATGGATGGTTGACCATACTTCTTTCGGTCTTTTGGAG
GATAGTGCGCGTCGGTAAAAACTGGATTTTGTTACTCGAATAAGAGTTTT
TAATTCGTTTCGGATTTTACGAAACAGATCCCAATCTTTTTGCTCGGACT
GCGGGGAATGACATTTGGTTCGTAAATAGTCTCTTTCCTTTTGCTTCTCG
CTGATGTTGAGATCTTTTAACCACGGAGCTGGTGGGCACGTTAATTTCTG
CCTGATGAGGGGTGCCTGTCGGTCTAGACAATCGgtaaaaagtttgttaa
ataTGTCTAGTTTTTCTTCAGCGGTATCAAAAGCGTAGACAAGATTGAAC
GGTATTTGTCTGATATCTGTTTTAAATGCTGCTAAATCAAAGTTTTTCTc
atttcgaataaatttatatCTGGGTTCAAACCGTGGTTTGCGTAGATTAC
ATATGACGAAGGCAGCATCATGATCGCTCATTTCGTCGCATGGGATAACA
TCATCGTGGATGACTTTTGAGAATGAGGTAATGATATGGTCAATGCAGGT
TTTTCCCTTCCGGGTTGGCTTCTTCACTTGTTGACGTAAACCGAGACGAT
CGAGGGTATCTTTATATTCGTCAGCAACGTTGTAGTTCCCTTTCAAGAGA
TCGATATTTGTATTACCTGTAATCACGATTGGATCAGACCAGATGGTGTG
AACGTACGATAttaatgtttcgaatttttgaaGCCAAGCACGTTTGTCAA
CGTCAACTAAGTCAACTAAGGCCACATCTAAATATATTGTTTGTAATACA
TTAGatctaaatgaaaagaaagaagaatataAACTAATCTCCCCTTCCTG
GAGAGGTCATGGTCACTGTAGAT Coding sequence (CDS) from alignment at sc0001666:2778..3650 >TCONS_00037612 ID=TCONS_00037612|Name=TCONS_00037612|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0001666:2778..3650 (Clytia hemisphaerica)
TTTCAGGATGCGATGGATGGTTGACCATACTTCTTTCGGTCTTTTGGAGG
ATAGTGCGCGTCGGTAAAAACTGGATTTTGTTACTCGAATAAGAGTTTTT
AATTCGTTTCGGATTTTACGAAACAGATCCCAATCTTTTTGCTCGGACTG
CGGGGAATGACATTTGGTTCGTAAATAGTCTCTTTCCTTTTGCTTCTCGC
TGATGTTGAGATCTTTTAACCACGGAGCTGGTGGGCACGTTAATTTCTGC
CTGATGAGGGGTGCCTGTCGGTCTAGACAATCGgtaaaaagtttgttaaa
taTGTCTAGTTTTTCTTCAGCGGTATCAAAAGCGTAGACAAGATTGAACG
GTATTTGTCTGATATCTGTTTTAAATGCTGCTAAATCAAAGTTTTTCTca
tttcgaataaatttatatCTGGGTTCAAACCGTGGTTTGCGTAGATTACA
TATGACGAAGGCAGCATCATGATCGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037612-exon-sc0001666-1491911889:2778..3650 | TCONS_00037612-exon-sc0001666-1491911889:2778..3650 | Clytia hemisphaerica | exon |
| TCONS_00037612-exon-sc0001666-1510915933:2778..3650 | TCONS_00037612-exon-sc0001666-1510915933:2778..3650 | Clytia hemisphaerica | exon |
| TCONS_00037612-exon-sc0001666-1575043694:2778..3650 | TCONS_00037612-exon-sc0001666-1575043694:2778..3650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001666 | supercontig | sc0001666:2778..3650 . |
Blast
The following BLAST results are available for this feature:
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