TCONS_00037607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037607
Unique NameTCONS_00037607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037607 ID=TCONS_00037607|Name=TCONS_00037607|organism=Clytia hemisphaerica|type=transcript|length=875bp
taaaaacaaaaagattcattaaaaattataaaaaaacatgttgaACAGTG
TATATGCAGCCATCAATCAACGCACACTTGCGATAGCCGATCGTAACCTA
GCAACGTATGGCCTGAACGGACAATTGCCGTCCGATACAGACGACGAGGA
CTATATTCCATCAGGGGAACCCTCTGCCAAGACAAACAAAAGGAAGAGAA
AGATGACCAGGAAAGTGATATCAACTTCTGAGGATGAAGACGGTGATTCC
ATTGAGAGTGATCATAGTGAAGAGAAGGAAGAGAAGCCAAAAGcgaaaag
aaagaaaaagaaacttaCACCTGGCAAGAGAAAGAAAGCGAATGCAAAGA
TTAAAAATGCAGATGACGACGAGAAACCGTCaacttcaaattcaaagaag
aaaaaagGCGATGTAAAGAAAAAGTCAACATCTTCTGCTACAAAGAAAAC
TAAAGCAAAAGCAACCAACAACAAACCAGATGAAGACTCTACAAGTTTGA
TTCAAATTTACATCGCTTTGAAATATCTTTTGCTTTCAGCTTTCCTTTGA
ACTAGAGCAGTGGGCTCTATAGAATCCCTTttgctttgcgaacacgagac
tcgttctccgtgcgtaaccccttttacgattgcTTTTCTGTTGCATTTTT
ACCGAATATCTTATCATGACCCGCAAACTTACCAGTATCATAtgatatca
tatttttttaaaacctATGTAGGCAGAAACTGTAAACAAACGTCTTTATT
ATTCATACAGGTACTCGTAAAAAATCGAACCGATCGAAGCTTTTGTTTGG
AGCTGACCGTGGAAGCGATGACTCGGAAGACGAAGATTATGTTCCAGAGG
GCGGCCGTCCATCCTCCAAACCCAC
Run BLAST on NCBI

transcript from alignment at sc0001666:17961..19600+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037607 ID=TCONS_00037607|Name=TCONS_00037607|organism=Clytia hemisphaerica|type=transcript|length=1640bp|location=Sequence derived from alignment at sc0001666:17961..19600+ (Clytia hemisphaerica)
taaaaacaaaaagattcattaaaaattataaaaaaacatgttgaACAGTG
TATATGCAGCCATCAATCAACGCACACTTGCGATAGCCGATCGTAACCTA
GCAACGTATGGCCTGAACGGACAATTGCCGTCCGATACAGACGACGAGGA
CTATATTCCATCAGGGGAACCCTCTGCCAAGACAAACAAAAGGAAGAGAA
AGATGACCAGGAAAGTGATATCAACTTCTGAGGATGAAGACGGTGATTCC
ATTGAGAGTGATCATAGTGAAGAGAAGGAAGAGAAGCCAAAAGGTTGCAA
TCTCGTTTTATATCTATTTTCATATTCAAATCACTTACCTAATTTTTCCT
TATTTACATACACAAATTAAGACCTGTGTAGAATATATCGTTCTTatttc
aacaaaattttctaattttcatttcaaatgatttgcttatcaatattttt
ttgcaaatatttatttttcagcgaaaagaaagaaaaagaaacttaCACCT
GGCAAGAGAAAGAAAGCGAATGCAAAGATTAAAAATGCAGATGACGACGA
GAAACCGTCaacttcaaattcaaagaagaaaaaaggtacacgcttttttt
ataagaattgtgTTTTTtgattcatcatgaatattctcaACTTTTGGGGG
GGAANAAGAATTGTGTTTTTcgattcatcatgaatattctcaacttttgg
gggaaaatcatcctgaaatattgtTATGGTAATCTTAGGTATGAATCAAA
AGCCATCCAAAATCTAGCATTTAATAcatatttggcatttttgtggaCAA
AATGTGTACTTGCGACACGCCAAAATGGGAGAAAGTACAGCTCTCCTGTG
GAGCGTCATGGTATGTTAGGTGAGCGTATAAACAATTCGACGTTGACCCT
TGTTGACCTCTTTCATGAATGTTCaataaaagtttaaaagatATAAAAGG
GAGCTTTCCTTTGAAAGTTGCTGTCAAAGCTACTGGAAATCTATGTTCGt
ttggagtctctttaactcgaacctcaataactcgaatgtctccttaactt
tAATAAGTGTTATGGTcttttcagttaacaatgccttttaaaatttgctc
aataactcgaacaaaGTTGTACCTCGTGTATTATATTCTTTTACTGACAT
TGATTTCATGTTTTTAACTTAGGCGATGTAAAGAAAAAGTCAACATCTTC
TGCTACAAAGAAAACTAAAGCAAAAGCAACCAACAACAAACCAGATGAAG
ACTCTACAAGTTTGATTCAAATTTACATCGCTTTGAAATATCTTTTGCTT
TCAGCTTTCCTTTGAACTAGAGCAGTGGGCTCTATAGAATCCCTTttgct
ttgcgaacacgagactcgttctccgtgcgtaaccccttttacgattgcTT
TTCTGTTGCATTTTTACCGAATATCTTATCATGACCCGCAAACTTACCAG
TATCATAtgatatcatatttttttaaaacctATGTAGGCAGAAACTGTAA
ACAAACGTCTTTATTATTCATACAGGTACTCGTAAAAAATCGAACCGATC
GAAGCTTTTGTTTGGAGCTGACCGTGGAAGCGATGACTCGGAAGACGAAG
ATTATGTTCCAGAGGGCGGCCGTCCATCCTCCAAACCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022359XLOC_022359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037607-exon-sc0001666-1491911889:17961..18253TCONS_00037607-exon-sc0001666-1491911889:17961..18253Clytia hemisphaericaexon
TCONS_00037607-exon-sc0001666-1510915933:17961..18253TCONS_00037607-exon-sc0001666-1510915933:17961..18253Clytia hemisphaericaexon
TCONS_00037607-exon-sc0001666-1575043694:17961..18253TCONS_00037607-exon-sc0001666-1575043694:17961..18253Clytia hemisphaericaexon
TCONS_00037607-exon-sc0001666-1491911889:18432..18545TCONS_00037607-exon-sc0001666-1491911889:18432..18545Clytia hemisphaericaexon
TCONS_00037607-exon-sc0001666-1510915933:18432..18545TCONS_00037607-exon-sc0001666-1510915933:18432..18545Clytia hemisphaericaexon
TCONS_00037607-exon-sc0001666-1575043694:18432..18545TCONS_00037607-exon-sc0001666-1575043694:18432..18545Clytia hemisphaericaexon
TCONS_00037607-exon-sc0001666-1491911889:19133..19600TCONS_00037607-exon-sc0001666-1491911889:19133..19600Clytia hemisphaericaexon
TCONS_00037607-exon-sc0001666-1510915933:19133..19600TCONS_00037607-exon-sc0001666-1510915933:19133..19600Clytia hemisphaericaexon
TCONS_00037607-exon-sc0001666-1575043694:19133..19600TCONS_00037607-exon-sc0001666-1575043694:19133..19600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001666supercontigsc0001666:17961..19600 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.476	0.194491	0.100712	0.181279	0.818165	0.840449	0.403509	0.431209	0.568141	0.336095	0.4354	0.685702	1.21306	1.18165	0.657301	0.626673	0.159234	1.26492	0.864487	0.901379	0.914118	0.368605	0.19536	0.0912615	0.919608	0.908773	0.65107	0.608951	0.413211	0.310144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top