TCONS_00037600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037600
Unique NameTCONS_00037600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037600 ID=TCONS_00037600|Name=TCONS_00037600|organism=Clytia hemisphaerica|type=transcript|length=486bp
CATACCATTGTCACCAAGAGGCCAGGAACAGCAAAAACAGTGACTGAAAT
GACAAAGCAGAGTAGAACTAGGATGAAGAAAACTTGTACGGACAACCTTT
TGACTGAGCTGGAATCGAACATTCCCGAGTTTGACGATGGATCGCTTAAA
AATCTAGGCTATAAGACAATGGGTGGTGCGTTTGGCCAGGTATGGGCCTA
TGAGATTACCTTTATGGGAGTCAAATGCGCCCGAAAAACTATTTCCGGAT
CAATAAAGGAGTTGAGAGCAGAGGCGTTAGTTTTGAATAGTCTATCTGNC
CGAAAAACTATTTCCGGATCAATGAAGGAGTTGAGAGCAGAGGCGTTAGC
TTTGAATAGTCTATCTGGACACCCAGGTTTCCCTTACTTGTTCGGATTAA
CAAAATCCGGAGCTCTTTTGATGGAGTACATCTCCTCAAATGCAAACCGC
CTCACCAGCTCAACCACGTTAAGATCGATATTGAAG
Run BLAST on NCBI

protein sequence of TCONS_00037600-protein

>TCONS_00037600-protein ID=TCONS_00037600-protein|Name=TCONS_00037600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
HTIVTKRPGTAKTVTEMTKQSRTRMKKTCTDNLLTELESNIPEFDDGSLK
NLGYKTMGGAFGQVWAYEITFMGVKCARKTISGSIKELRAEALVLNSLSX
RKTISGSMKELRAEALALNSLSGHPGFPYLFGLTKSGALLMEYISSNANR
LTSSTTLRSILK
Run BLAST on NCBI

transcript from alignment at sc0001664:21319..21804

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037600 ID=TCONS_00037600|Name=TCONS_00037600|organism=Clytia hemisphaerica|type=transcript|length=486bp|location=Sequence derived from alignment at sc0001664:21319..21804 (Clytia hemisphaerica)
CTTCAATATCGATCTTAACGTGGTTGAGCTGGTGAGGCGGTTTGCATTTG
AGGAGATGTACTCCATCAAAAGAGCTCCGGATTTTGTTAATCCGAACAAG
TAAGGGAAACCTGGGTGTCCAGATAGACTATTCAAAGCTAACGCCTCTGC
TCTCAACTCCTTCATTGATCCGGAAATAGTTTTTCGGNCAGATAGACTAT
TCAAAACTAACGCCTCTGCTCTCAACTCCTTTATTGATCCGGAAATAGTT
TTTCGGGCGCATTTGACTCCCATAAAGGTAATCTCATAGGCCCATACCTG
GCCAAACGCACCACCCATTGTCTTATAGCCTAGATTTTTAAGCGATCCAT
CGTCAAACTCGGGAATGTTCGATTCCAGCTCAGTCAAAAGGTTGTCCGTA
CAAGTTTTCTTCATCCTAGTTCTACTCTGCTTTGTCATTTCAGTCACTGT
TTTTGCTGTTCCTGGCCTCTTGGTGACAATGGTATG

Coding sequence (CDS) from alignment at sc0001664:21319..21804

>TCONS_00037600 ID=TCONS_00037600|Name=TCONS_00037600|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0001664:21319..21804 (Clytia hemisphaerica)
CTTCAATATCGATCTTAACGTGGTTGAGCTGGTGAGGCGGTTTGCATTTG
AGGAGATGTACTCCATCAAAAGAGCTCCGGATTTTGTTAATCCGAACAAG
TAAGGGAAACCTGGGTGTCCAGATAGACTATTCAAAGCTAACGCCTCTGC
TCTCAACTCCTTCATTGATCCGGAAATAGTTTTTCGGNCAGATAGACTAT
TCAAAACTAACGCCTCTGCTCTCAACTCCTTTATTGATCCGGAAATAGTT
TTTCGGGCGCATTTGACTCCCATAAAGGTAATCTCATAGGCCCATACCTG
GCCAAACGCACCACCCATTGTCTTATAGCCTAGATTTTTAAGCGATCCAT
CGTCAAACTCGGGAATGTTCGATTCCAGCTCAGTCAAAAGGTTGTCCGTA
CAAGTTTTCTTCATCCTAGTTCTACTCTGCTTTGTCATTTCAGTCACTGT
TTTTGCTGTTCCTGGCCTCTTGGTGACAATGGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022356XLOC_022356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037600-exon-sc0001664-1491911889:21319..21804TCONS_00037600-exon-sc0001664-1491911889:21319..21804Clytia hemisphaericaexon
TCONS_00037600-exon-sc0001664-1510915933:21319..21804TCONS_00037600-exon-sc0001664-1510915933:21319..21804Clytia hemisphaericaexon
TCONS_00037600-exon-sc0001664-1575043694:21319..21804TCONS_00037600-exon-sc0001664-1575043694:21319..21804Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037600-proteinTCONS_00037600-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001664supercontigsc0001664:21319..21804 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56157	3.12242	1.7402	1.84439	16.7539	14.877	6.42194	7.55372	8.74227	5.21383	5.44995	5.97097	3.32206	4.3346	2.90909	1.40485	2.98059	3.15356	1.49765	1.56719	1.36217	0.72482	0.587409	2.40318	8.93829	10.309	0.526863	0.187428	0.710786	0.144836
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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