TCONS_00037599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037599
Unique NameTCONS_00037599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037599 ID=TCONS_00037599|Name=TCONS_00037599|organism=Clytia hemisphaerica|type=transcript|length=336bp
NNTTCGTGCTTCTATTTGCAACACCGAGGGCATTAACTTTCAAAGTTATG
TTCTCCCATAGAGCTTGTTTAGCAGCGTTTGTTATTGAAGGGGAGAACTT
TCCTTCAATTGTGCTCTGACTAGCCTCGTATTCCTCCAAGATGATTCTGA
TCTCATCAGCAGTGAAGTTAGTTTTTCTTGGTCTTTTCCCTGACATTTTG
TATAGATTGTTCGATTGTTCTTGAAtgagttttttaaagttttttttatt
tctccttttgtttgttttggtttcgcagggaacgttcgaaaattgaaaaa
tgacgtcacggAACATTCGAAAAGGGTTTCCCAGAG
Run BLAST on NCBI

protein sequence of TCONS_00037599-protein

>TCONS_00037599-protein ID=TCONS_00037599-protein|Name=TCONS_00037599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
LGNPFRMFRDVIFQFSNVPCETKTNKRRNKKNFKKLIQEQSNNLYKMSGK
RPRKTNFTADEIRIILEEYEASQSTIEGKFSPSITNAAKQALWENITLKV
NALGVANRSTX
Run BLAST on NCBI

transcript from alignment at sc0001664:11334..11669

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037599 ID=TCONS_00037599|Name=TCONS_00037599|organism=Clytia hemisphaerica|type=transcript|length=336bp|location=Sequence derived from alignment at sc0001664:11334..11669 (Clytia hemisphaerica)
CTCTGGGAAACCCTTTTCGAATGTTccgtgacgtcatttttcaattttcg
aacgttccctgcgaaaccaaaacaaacaaaaggagaaataaaaaaaactt
taaaaaactcaTTCAAGAACAATCGAACAATCTATACAAAATGTCAGGGA
AAAGACCAAGAAAAACTAACTTCACTGCTGATGAGATCAGAATCATCTTG
GAGGAATACGAGGCTAGTCAGAGCACAATTGAAGGAAAGTTCTCCCCTTC
AATAACAAACGCTGCTAAACAAGCTCTATGGGAGAACATAACTTTGAAAG
TTAATGCCCTCGGTGTTGCAAATAGAAGCACGAANN

Coding sequence (CDS) from alignment at sc0001664:11334..11669

>TCONS_00037599 ID=TCONS_00037599|Name=TCONS_00037599|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0001664:11334..11669 (Clytia hemisphaerica)
CTGGGAAACCCTTTTCGAATGTTccgtgacgtcatttttcaattttcgaa
cgttccctgcgaaaccaaaacaaacaaaaggagaaataaaaaaaacttta
aaaaactcaTTCAAGAACAATCGAACAATCTATACAAAATGTCAGGGAAA
AGACCAAGAAAAACTAACTTCACTGCTGATGAGATCAGAATCATCTTGGA
GGAATACGAGGCTAGTCAGAGCACAATTGAAGGAAAGTTCTCCCCTTCAA
TAACAAACGCTGCTAAACAAGCTCTATGGGAGAACATAACTTTGAAAGTT
AATGCCCTCGGTGTTGCAAATAGAAGCACGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022355XLOC_022355Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037599-proteinTCONS_00037599-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037599-exon-sc0001664-1491911889:11334..11669TCONS_00037599-exon-sc0001664-1491911889:11334..11669Clytia hemisphaericaexon
TCONS_00037599-exon-sc0001664-1510915933:11334..11669TCONS_00037599-exon-sc0001664-1510915933:11334..11669Clytia hemisphaericaexon
TCONS_00037599-exon-sc0001664-1575043694:11334..11669TCONS_00037599-exon-sc0001664-1575043694:11334..11669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001664supercontigsc0001664:11334..11669 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25191	0.865111	0.316293	0	5.18996	3.70264	1.37272	3.36226	2.94601	2.5138	1.33834	1.25459	1.44441	0.29228	0.767979	0.680909	2.91324	2.10001	1.76216	2.76315	1.29233	1.60102	0.640591	0	3.8435	2.87685	2.03517	1.07378	2.10887	0.804186
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028002Myb_DNA-bind_5
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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