TCONS_00037597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037597
Unique NameTCONS_00037597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037597 ID=TCONS_00037597|Name=TCONS_00037597|organism=Clytia hemisphaerica|type=transcript|length=517bp
AGCAGGTGTAACGTGAAGCCGCTTTCTCTTCGTCATGAACTTCCTATTTC
CATCTACGACTGTGTGGTAGCATCGAACAGCAATGTCTCGAAGGAAGTCG
TATGATTTCTCCTTCTTGACCTGCTTTGCTACAAACCGGTGGGAGTATTT
GTGATAGGCAATCTTGAATCACCCTACCAACTTTCCCTGATTGAGCGTTT
GCTTCTGTTCCCTATTGATATTAAGGTTGTGGTCTAAGGCAGCAAGCATC
ATACCACATTCCATTTTATCCTGCTCGTAAAAGATAGATTTGGGCAGGTA
CCTTATCTTCAGTGCACAGAGAACCTCCAAGTGTGTTGTATAGACGTTTA
AATTGAGCTTGCGAAGACCTTTTTGGAATTCCGCGTTAAAGATCATCTTC
GTCAAGGCTTCGTGTGGTTTAGATCCTGCCTTTAGCCAATCATACTGATG
TGATTTGTCATGGGGTGGTTAACTTGTGTAGTGGTTTCCTGGAAATTCGT
ATATGTCAACAATGTGA
Run BLAST on NCBI

transcript from alignment at sc0001661:22571..23087

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037597 ID=TCONS_00037597|Name=TCONS_00037597|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at sc0001661:22571..23087 (Clytia hemisphaerica)
TCACATTGTTGACATATACGAATTTCCAGGAAACCACTACACAAGTTAAC
CACCCCATGACAAATCACATCAGTATGATTGGCTAAAGGCAGGATCTAAA
CCACACGAAGCCTTGACGAAGATGATCTTTAACGCGGAATTCCAAAAAGG
TCTTCGCAAGCTCAATTTAAACGTCTATACAACACACTTGGAGGTTCTCT
GTGCACTGAAGATAAGGTACCTGCCCAAATCTATCTTTTACGAGCAGGAT
AAAATGGAATGTGGTATGATGCTTGCTGCCTTAGACCACAACCTTAATAT
CAATAGGGAACAGAAGCAAACGCTCAATCAGGGAAAGTTGGTAGGGTGAT
TCAAGATTGCCTATCACAAATACTCCCACCGGTTTGTAGCAAAGCAGGTC
AAGAAGGAGAAATCATACGACTTCCTTCGAGACATTGCTGTTCGATGCTA
CCACACAGTCGTAGATGGAAATAGGAAGTTCATGACGAAGAGAAAGCGGC
TTCACGTTACACCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022353XLOC_022353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037597-exon-sc0001661-1491911889:22571..23087TCONS_00037597-exon-sc0001661-1491911889:22571..23087Clytia hemisphaericaexon
TCONS_00037597-exon-sc0001661-1510915933:22571..23087TCONS_00037597-exon-sc0001661-1510915933:22571..23087Clytia hemisphaericaexon
TCONS_00037597-exon-sc0001661-1575043694:22571..23087TCONS_00037597-exon-sc0001661-1575043694:22571..23087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001661supercontigsc0001661:22571..23087 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.46075	0.382505	0.505876	0.255193	0	0	0.592367	0.415925	0.339476	0.240464	0.591397	0.446664	0.255049	0.568235	0.166989	0.323077	0.0864708	0.58867	0.734681	1.14122	0.26637	0.325934	0	0.151158	0.921442	0.882992	0.355447	0.542604	0.0308601	0.20965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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