TCONS_00037590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037590
Unique NameTCONS_00037590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037590 ID=TCONS_00037590|Name=TCONS_00037590|organism=Clytia hemisphaerica|type=transcript|length=634bp
ttcaataagttTCTTCACATTCTCCTTCCACTCTTCATGTGGTAAGGCCC
CAGGCTCATCAGGGCAATATTTGTAGCCATAATAGCGGTCATGTCCTGCT
GTTACCACTTTGTTGCATTTCCTGCAAGAGTAGGGTTTCCGATCTTTTGC
CGTTTCAGGATCCTTGCCTTTAGACAGGTAGCGATAATATGTGGACTTTG
GCAAACCAATCGGCTTGCCTTTTTGTGCTGCTGGTGGTGGTCCTTGTCCA
GATGGATGtatgatgaaatttggcactgGTTTTGGCGGCATGAAAGGATG
AGGTTCTGCAGGCTTTGGCTTGATGGGAAGATAGAAATATTGTTGATTTG
GTGGGGGTTGCATCAATGTTGGTGGCTGTGGAAACTGCATCAGCATTTGT
TGAGGTAACTGCACACAACCAAAAGGTAGCTGCTGGGTTGATGTTGTTGT
GGCGGATGGCATCAGTGATGGTGGTGGGGGTGGCGAAAGCTGTGGTGATT
TTTGCATTGGCTGAGTTTCTTCTGGTGGTTGCTGGGTTGATGCTGAAGCA
GGTGGCGGCGGTGACAGTGATAGAGGATCAGGGAGAACATCAGTTGGCAA
GAAGTGGACAGGGCTGGTACTGATTTTGTCTATG
Run BLAST on NCBI

protein sequence of TCONS_00037590-protein

>TCONS_00037590-protein ID=TCONS_00037590-protein|Name=TCONS_00037590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
IDKISTSPVHFLPTDVLPDPLSLSPPPPASASTQQPPEETQPMQKSPQLS
PPPPPSLMPSATTTSTQQLPFGCVQLPQQMLMQFPQPPTLMQPPPNQQYF
YLPIKPKPAEPHPFMPPKPVPNFIIHPSGQGPPPAAQKGKPIGLPKSTYY
RYLSKGKDPETAKDRKPYSCRKCNKVVTAGHDRYYGYKYCPDEPGALPHE
EWKENVKKLIE
Run BLAST on NCBI

transcript from alignment at sc0001659:31873..32506

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037590 ID=TCONS_00037590|Name=TCONS_00037590|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0001659:31873..32506 (Clytia hemisphaerica)
CATAGACAAAATCAGTACCAGCCCTGTCCACTTCTTGCCAACTGATGTTC
TCCCTGATCCTCTATCACTGTCACCGCCGCCACCTGCTTCAGCATCAACC
CAGCAACCACCAGAAGAAACTCAGCCAATGCAAAAATCACCACAGCTTTC
GCCACCCCCACCACCATCACTGATGCCATCCGCCACAACAACATCAACCC
AGCAGCTACCTTTTGGTTGTGTGCAGTTACCTCAACAAATGCTGATGCAG
TTTCCACAGCCACCAACATTGATGCAACCCCCACCAAATCAACAATATTT
CTATCTTCCCATCAAGCCAAAGCCTGCAGAACCTCATCCTTTCATGCCGC
CAAAACcagtgccaaatttcatcataCATCCATCTGGACAAGGACCACCA
CCAGCAGCACAAAAAGGCAAGCCGATTGGTTTGCCAAAGTCCACATATTA
TCGCTACCTGTCTAAAGGCAAGGATCCTGAAACGGCAAAAGATCGGAAAC
CCTACTCTTGCAGGAAATGCAACAAAGTGGTAACAGCAGGACATGACCGC
TATTATGGCTACAAATATTGCCCTGATGAGCCTGGGGCCTTACCACATGA
AGAGTGGAAGGAGAATGTGAAGAaacttattgaa

Coding sequence (CDS) from alignment at sc0001659:31873..32506

>TCONS_00037590 ID=TCONS_00037590|Name=TCONS_00037590|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0001659:31873..32506 (Clytia hemisphaerica)
ATAGACAAAATCAGTACCAGCCCTGTCCACTTCTTGCCAACTGATGTTCT
CCCTGATCCTCTATCACTGTCACCGCCGCCACCTGCTTCAGCATCAACCC
AGCAACCACCAGAAGAAACTCAGCCAATGCAAAAATCACCACAGCTTTCG
CCACCCCCACCACCATCACTGATGCCATCCGCCACAACAACATCAACCCA
GCAGCTACCTTTTGGTTGTGTGCAGTTACCTCAACAAATGCTGATGCAGT
TTCCACAGCCACCAACATTGATGCAACCCCCACCAAATCAACAATATTTC
TATCTTCCCATCAAGCCAAAGCCTGCAGAACCTCATCCTTTCATGCCGCC
AAAACcagtgccaaatttcatcataCATCCATCTGGACAAGGACCACCAC
CAGCAGCACAAAAAGGCAAGCCGATTGGTTTGCCAAAGTCCACATATTAT
CGCTACCTGTCTAAAGGCAAGGATCCTGAAACGGCAAAAGATCGGAAACC
CTACTCTTGCAGGAAATGCAACAAAGTGGTAACAGCAGGACATGACCGCT
ATTATGGCTACAAATATTGCCCTGATGAGCCTGGGGCCTTACCACATGAA
GAGTGGAAGGAGAATGTGAAGAaacttattgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022346XLOC_022346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037590-exon-sc0001659-1491911889:31873..32506TCONS_00037590-exon-sc0001659-1491911889:31873..32506Clytia hemisphaericaexon
TCONS_00037590-exon-sc0001659-1510915933:31873..32506TCONS_00037590-exon-sc0001659-1510915933:31873..32506Clytia hemisphaericaexon
TCONS_00037590-exon-sc0001659-1575043694:31873..32506TCONS_00037590-exon-sc0001659-1575043694:31873..32506Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037590-proteinTCONS_00037590-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001659supercontigsc0001659:31873..32506 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0864788	0.382045	0.873509	0.533679	0.184744	0.175759	0.40152	0.265588	0.123789	0	0	0.167793	0.295269	0.172968	1.10692	0.718696	0.179127	0.33483	0.115569	0	0	0.325749	0.420974	0.190866	0.5741	0.394301	0.107055	0	0	0.156703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top