TCONS_00037587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037587
Unique NameTCONS_00037587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037587 ID=TCONS_00037587|Name=TCONS_00037587|organism=Clytia hemisphaerica|type=transcript|length=822bp
GTCCATTTCCTCAGTGGCCAGATAGTAGACATCCTGCAGGTCTACGACTT
TCTGCACTGTTCTGTGGAGCCCTTTCGAACGAAGAAACTTTCCGCAGACT
TCGCACTTAAATTGGTAATTCCACATCTTCTTGAGCATCCATAGGAAGAA
GTTGTGGAGAAAATATTTGTTGACGTCAGGCTTAAGTAAGGAGGTGTAAG
CTGCGTCAGTGTCAGGGTTATACCAATTTTGCAACTTCTCAAGGTTCACC
GTGTTTTTCGATACAAAGACCTTTTGACCAATCCAGTCTCTGCCGGCATC
TGATAATTTTTCCCACACAACTGGAACACGAGCAGTATAATTGTTGGGCT
GTCGTAATCTTTTTGATGGGCTTTCAGGAGGAGCTTCAATGTTTTCCTCA
ATTGCAGCTTTTGTAGGAGTTTGGACCAGCTTGAAGGAACTGGCTGGAGT
TGGGTTGTTTACATTTTCAGGTGGATCTACTGACTTTTGATTAGGAGGTT
GATTTTCACAAGTTGGAGTGTTATCAGACAAGATAGGTTGTTGGGGTAGA
ATGTCAGACGAAACGGGATCTGGATCAGTTGATTCAGTTTGAGGAATGGT
TGGAGAAGAGGGTGACTTTTCAGTAGAGGGGCTTTTGTTTGTGCTGAGCA
AGTCACGTCTTTTGGAAGGTGGTGTAAAGGCTGGCGCAGCATGTTTGAAC
GAACGGTTTTTAAACAGGCAATTGTCTGCTGTCGATGGTGTGACAGATTg
ctatgataaaaataattacaCGTAGAGGACCAAAACATTTATTATGATTT
CCAGGTGAAACAGAGTTGAAAG
Run BLAST on NCBI

transcript from alignment at sc0001659:20975..21796

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037587 ID=TCONS_00037587|Name=TCONS_00037587|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0001659:20975..21796 (Clytia hemisphaerica)
CTTTCAACTCTGTTTCACCTGGAAATCATAATAAATGTTTTGGTCCTCTA
CGtgtaattatttttatcatagcAATCTGTCACACCATCGACAGCAGACA
ATTGCCTGTTTAAAAACCGTTCGTTCAAACATGCTGCGCCAGCCTTTACA
CCACCTTCCAAAAGACGTGACTTGCTCAGCACAAACAAAAGCCCCTCTAC
TGAAAAGTCACCCTCTTCTCCAACCATTCCTCAAACTGAATCAACTGATC
CAGATCCCGTTTCGTCTGACATTCTACCCCAACAACCTATCTTGTCTGAT
AACACTCCAACTTGTGAAAATCAACCTCCTAATCAAAAGTCAGTAGATCC
ACCTGAAAATGTAAACAACCCAACTCCAGCCAGTTCCTTCAAGCTGGTCC
AAACTCCTACAAAAGCTGCAATTGAGGAAAACATTGAAGCTCCTCCTGAA
AGCCCATCAAAAAGATTACGACAGCCCAACAATTATACTGCTCGTGTTCC
AGTTGTGTGGGAAAAATTATCAGATGCCGGCAGAGACTGGATTGGTCAAA
AGGTCTTTGTATCGAAAAACACGGTGAACCTTGAGAAGTTGCAAAATTGG
TATAACCCTGACACTGACGCAGCTTACACCTCCTTACTTAAGCCTGACGT
CAACAAATATTTTCTCCACAACTTCTTCCTATGGATGCTCAAGAAGATGT
GGAATTACCAATTTAAGTGCGAAGTCTGCGGAAAGTTTCTTCGTTCGAAA
GGGCTCCACAGAACAGTGCAGAAAGTCGTAGACCTGCAGGATGTCTACTA
TCTGGCCACTGAGGAAATGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022343XLOC_022343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037587-exon-sc0001659-1491911889:20975..21796TCONS_00037587-exon-sc0001659-1491911889:20975..21796Clytia hemisphaericaexon
TCONS_00037587-exon-sc0001659-1510915933:20975..21796TCONS_00037587-exon-sc0001659-1510915933:20975..21796Clytia hemisphaericaexon
TCONS_00037587-exon-sc0001659-1575043694:20975..21796TCONS_00037587-exon-sc0001659-1575043694:20975..21796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001659supercontigsc0001659:20975..21796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0604103	0	0	0	0	0.0328637	0.105803	0	0.133595	0	0	0	0	0	0.06033	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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