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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037583 ID=TCONS_00037583|Name=TCONS_00037583|organism=Clytia hemisphaerica|type=transcript|length=1598bp
NNAAATCACAGCTATCAGATCACGACAAATCATTACGAGTTATTTCCGAA
AAATACCAAGAACTTCTCAAAACACCATCAGCCAACGTGGAATTGGAATC
TCAAATATCAGAAATTGGTGAGAAGTACATTGAGTTGAGCAACCTAAAAG
GAACCTTTATTGATTACCTCAATGAACAGTTTACAGATCGAGAGATTGAA
AAGTacaaatctttcaaagaatCCAACCTCAACAtcaagattgaaaaatt
ttcagggTATGAATCAATAGACATTTATACGTTCAGatcaaattttgaga
aagttCATCTACGAAATACGCCAAAGAAACTCTTACCTGATTTACTTATA
AACAATCATTTATCTGAACCTGCCTTATCACTTGTTAAAGGCTTAACTGA
CATTGAAATTATCTGGAATCGCCTAGTTGAAGCTTATGGCAACTCCAAAA
TGCTTGTATCTCGTAAACTTGCTGACATAAAGAAGTTGGATCCAATCAAA
ACCAGACACGATCCTGCCAAAATCTTACGAACTATCACTGGACTGATCAA
AGTACTGAGAGACTTAATTTCTCTTGCTgagcaacataaaattgaaaatc
aacttTACTACGGCGATTGTTTGGATCAAGTGTACCAACTCTTGGACGAC
ACCAGATTGGACAAATGGCTAGCAACAATCTGTGAGGAAGAGATCACTGA
GAAACAAAAGTGGTCAAATCTCATCATCTTCCTGGAGAAGGACGTCAAAC
TTCTCCAGCAAAAGCAACTCATCAAACTCCCAAACAACAAAGACGATAAA
GATGGCAGGTCAAAATCAGGCAAATCAGGATATGGAAGTCATCATGTCCC
ACCAAGTCATGACCCTGAACCAGCTTGTTACTTCTGCGACGGCAAATGTC
CATCTGAGCAATTTCAAACAAGAGGACCATGGGGGAAGATGGTAACTCAA
TATTTTGCCTGTAAACAATTTGTCAACAACACTCCACGTAAACGATTGTC
AACTCTGAAGCGCAAAGGATTGTGCTTCCAATGTCTACTACCCGGAGCAA
AATCGTCAGAGGGCAAACACAGAGATGGAAGGTGTCAATATGAATTTGTC
TGCAAACACCCGAGTCATTCATCATGGACGTCAAGAAGCACGTATTTGTC
TGTGATGATCACAAAGATACAGATGACAATCAAACTCTTCTTCAACGTTT
TAAAGACAAATTCATCAATCGAAATCAACATCTCCCAACCTTCGTCAAGG
TCAAAGTCTCATTTCACACTGACTGTCACATCAATGCCATGCCATCTGGC
AACATCCATCATTCAAGCCCTGGCATCTAACTATTTCAACCAATTTTGGT
CAACAATCAAAAGTTCACTGTATTCTTCGACAATGGCTGCAGCGACTTTG
TCATTCGAAAATCTGCAGTCAACCGATTAGGATCATATGTTACCCAAATC
TTCAGTGGAAGTGTCAACATTGGCGGTGTGGGTGGAACATCAACTCAATC
CTCACATGAGCCTACTCAACAATTGGTGATGTCTCAAAACTCCCATCGCT
TCCACAATCCATTGGCGGAGACGTCGACATCATGATTGGCGTCAGGTA Run BLAST on NCBI protein sequence of TCONS_00037583-protein >TCONS_00037583-protein ID=TCONS_00037583-protein|Name=TCONS_00037583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
KSQLSDHDKSLRVISEKYQELLKTPSANVELESQISEIGEKYIELSNLKG
TFIDYLNEQFTDREIEKYKSFKESNLNIKIEKFSGYESIDIYTFRSNFEK
VHLRNTPKKLLPDLLINNHLSEPALSLVKGLTDIEIIWNRLVEAYGNSKM
LVSRKLADIKKLDPIKTRHDPAKILRTITGLIKVLRDLISLAEQHKIENQ
LYYGDCLDQVYQLLDDTRLDKWLATICEEEITEKQKWSNLIIFLEKDVKL
LQQKQLIKLPNNKDDKDGRSKSGKSGYGSHHVPPSHDPEPACYFCDGKCP
SEQFQTRGPWGKMVTQYFACKQFVNNTPRKRLSTLKRKGLCFQCLLPGAK
SSEGKHRDGRCQYEFVCKHPSHSSWTSRSTYLSVMITKIQMTIKLFFNVL
KTNSSIEINISQPSSRSKSHFTLTVTSMPCHLATSIIQALASNYFNQFWS
TIKSSLYSSTMAAATLSFENLQSTD Run BLAST on NCBI transcript from alignment at sc0001658:34936..36533 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037583 ID=TCONS_00037583|Name=TCONS_00037583|organism=Clytia hemisphaerica|type=transcript|length=1598bp|location=Sequence derived from alignment at sc0001658:34936..36533 (Clytia hemisphaerica)
TACCTGACGCCAATCATGATGTCGACGTCTCCGCCAATGGATTGTGGAAG
CGATGGGAGTTTTGAGACATCACCAATTGTTGAGTAGGCTCATGTGAGGA
TTGAGTTGATGTTCCACCCACACCGCCAATGTTGACACTTCCACTGAAGA
TTTGGGTAACATATGATCCTAATCGGTTGACTGCAGATTTTCGAATGACA
AAGTCGCTGCAGCCATTGTCGAAGAATACAGTGAACTTTTGATTGTTGAC
CAAAATTGGTTGAAATAGTTAGATGCCAGGGCTTGAATGATGGATGTTGC
CAGATGGCATGGCATTGATGTGACAGTCAGTGTGAAATGAGACTTTGACC
TTGACGAAGGTTGGGAGATGTTGATTTCGATTGATGAATTTGTCTTTAAA
ACGTTGAAGAAGAGTTTGATTGTCATCTGTATCTTTGTGATCATCACAGA
CAAATACGTGCTTCTTGACGTCCATGATGAATGACTCGGGTGTTTGCAGA
CAAATTCATATTGACACCTTCCATCTCTGTGTTTGCCCTCTGACGATTTT
GCTCCGGGTAGTAGACATTGGAAGCACAATCCTTTGCGCTTCAGAGTTGA
CAATCGTTTACGTGGAGTGTTGTTGACAAATTGTTTACAGGCAAAATATT
GAGTTACCATCTTCCCCCATGGTCCTCTTGTTTGAAATTGCTCAGATGGA
CATTTGCCGTCGCAGAAGTAACAAGCTGGTTCAGGGTCATGACTTGGTGG
GACATGATGACTTCCATATCCTGATTTGCCTGATTTTGACCTGCCATCTT
TATCGTCTTTGTTGTTTGGGAGTTTGATGAGTTGCTTTTGCTGGAGAAGT
TTGACGTCCTTCTCCAGGAAGATGATGAGATTTGACCACTTTTGTTTCTC
AGTGATCTCTTCCTCACAGATTGTTGCTAGCCATTTGTCCAATCTGGTGT
CGTCCAAGAGTTGGTACACTTGATCCAAACAATCGCCGTAGTAaagttga
ttttcaattttatgttgctcAGCAAGAGAAATTAAGTCTCTCAGTACTTT
GATCAGTCCAGTGATAGTTCGTAAGATTTTGGCAGGATCGTGTCTGGTTT
TGATTGGATCCAACTTCTTTATGTCAGCAAGTTTACGAGATACAAGCATT
TTGGAGTTGCCATAAGCTTCAACTAGGCGATTCCAGATAATTTCAATGTC
AGTTAAGCCTTTAACAAGTGATAAGGCAGGTTCAGATAAATGATTGTTTA
TAAGTAAATCAGGTAAGAGTTTCTTTGGCGTATTTCGTAGATGaactttc
tcaaaatttgatCTGAACGTATAAATGTCTATTGATTCATAccctgaaaa
tttttcaatcttgaTGTTGAGGTTGGattctttgaaagatttgtACTTTT
CAATCTCTCGATCTGTAAACTGTTCATTGAGGTAATCAATAAAGGTTCCT
TTTAGGTTGCTCAACTCAATGTACTTCTCACCAATTTCTGATATTTGAGA
TTCCAATTCCACGTTGGCTGATGGTGTTTTGAGAAGTTCTTGGTATTTTT
CGGAAATAACTCGTAATGATTTGTCGTGATCTGATAGCTGTGATTTNN Coding sequence (CDS) from alignment at sc0001658:34936..36533 >TCONS_00037583 ID=TCONS_00037583|Name=TCONS_00037583|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at sc0001658:34936..36533 (Clytia hemisphaerica)
CTAATCGGTTGACTGCAGATTTTCGAATGACAAAGTCGCTGCAGCCATTG
TCGAAGAATACAGTGAACTTTTGATTGTTGACCAAAATTGGTTGAAATAG
TTAGATGCCAGGGCTTGAATGATGGATGTTGCCAGATGGCATGGCATTGA
TGTGACAGTCAGTGTGAAATGAGACTTTGACCTTGACGAAGGTTGGGAGA
TGTTGATTTCGATTGATGAATTTGTCTTTAAAACGTTGAAGAAGAGTTTG
ATTGTCATCTGTATCTTTGTGATCATCACAGACAAATACGTGCTTCTTGA
CGTCCATGATGAATGACTCGGGTGTTTGCAGACAAATTCATATTGACACC
TTCCATCTCTGTGTTTGCCCTCTGACGATTTTGCTCCGGGTAGTAGACAT
TGGAAGCACAATCCTTTGCGCTTCAGAGTTGACAATCGTTTACGTGGAGT
GTTGTTGACAAATTGTTTACAGGCAAAATATTGAGTTACCATCTTCCCCC
ATGGTCCTCTTGTTTGAAATTGCTCAGATGGACATTTGCCGTCGCAGAAG
TAACAAGCTGGTTCAGGGTCATGACTTGGTGGGACATGATGACTTCCATA
TCCTGATTTGCCTGATTTTGACCTGCCATCTTTATCGTCTTTGTTGTTTG
GGAGTTTGATGAGTTGCTTTTGCTGGAGAAGTTTGACGTCCTTCTCCAGG
AAGATGATGAGATTTGACCACTTTTGTTTCTCAGTGATCTCTTCCTCACA
GATTGTTGCTAGCCATTTGTCCAATCTGGTGTCGTCCAAGAGTTGGTACA
CTTGATCCAAACAATCGCCGTAGTAaagttgattttcaattttatgttgc
tcAGCAAGAGAAATTAAGTCTCTCAGTACTTTGATCAGTCCAGTGATAGT
TCGTAAGATTTTGGCAGGATCGTGTCTGGTTTTGATTGGATCCAACTTCT
TTATGTCAGCAAGTTTACGAGATACAAGCATTTTGGAGTTGCCATAAGCT
TCAACTAGGCGATTCCAGATAATTTCAATGTCAGTTAAGCCTTTAACAAG
TGATAAGGCAGGTTCAGATAAATGATTGTTTATAAGTAAATCAGGTAAGA
GTTTCTTTGGCGTATTTCGTAGATGaactttctcaaaatttgatCTGAAC
GTATAAATGTCTATTGATTCATAccctgaaaatttttcaatcttgaTGTT
GAGGTTGGattctttgaaagatttgtACTTTTCAATCTCTCGATCTGTAA
ACTGTTCATTGAGGTAATCAATAAAGGTTCCTTTTAGGTTGCTCAACTCA
ATGTACTTCTCACCAATTTCTGATATTTGAGATTCCAATTCCACGTTGGC
TGATGGTGTTTTGAGAAGTTCTTGGTATTTTTCGGAAATAACTCGTAATG
ATTTGTCGTGATCTGATAGCTGTGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037583-exon-sc0001658-1491911889:34936..36533 | TCONS_00037583-exon-sc0001658-1491911889:34936..36533 | Clytia hemisphaerica | exon |
| TCONS_00037583-exon-sc0001658-1510915933:34936..36533 | TCONS_00037583-exon-sc0001658-1510915933:34936..36533 | Clytia hemisphaerica | exon |
| TCONS_00037583-exon-sc0001658-1575043694:34936..36533 | TCONS_00037583-exon-sc0001658-1575043694:34936..36533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001658 | supercontig | sc0001658:34936..36533 . |
Blast
The following BLAST results are available for this feature:
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