TCONS_00037581 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037581
Unique NameTCONS_00037581
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037581 ID=TCONS_00037581|Name=TCONS_00037581|organism=Clytia hemisphaerica|type=transcript|length=588bp
NGTAATTTCAGCTTCAGGCTTATGTCTTTGTTACGCCATATTTGATCTCT
TAAGCGTCCAAAGCTGGAAGATGCTAAGCCCAGTCTTCGTTTGATGTCGT
TTGTAGTGCCTGGAACGTTACTTCCCAGGAAAACAAAGTCACTGACATTC
TCAACGTTCTCATTGTTGATTTGGATGGGTACTGGCGAGTCACTGATGGT
TTTGCATTTAGATGCGTTGATCTTCATTCCCCATTTGGAACAAGCGGTCT
CAGTTCAGCTGTcgatatttctaatttttcaaagattgcgGTCACAAGTG
TAGTGTCATCAGCATACCTAAGCTCCGTGGACATATTTTCTTTTAGTTCA
AGGTGGTCATCGAGACTCTTCAGCTCATCCATAACGAATTCCAGGAATAT
GTTAAATAGGACTGGAGATAGCAGACAGCCTTGTCGTACACCAACCTTGA
CCTTGAACCAATTGGTGATTTGTTTGTTAACAACTACAGCACATTCAGCA
TTTGAGTAGATGCTTTCAATGATATCAACGATACGTGGGTCAATACCAAT
CGCACGCATCATTTTCCATAATGCTTCCCGCCAGATGG
Run BLAST on NCBI

protein sequence of TCONS_00037581-protein

>TCONS_00037581-protein ID=TCONS_00037581-protein|Name=TCONS_00037581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
IWREALWKMMRAIGIDPRIVDIIESIYSNAECAVVVNKQITNWFKVKVGV
RQGCLLSPVLFNIFLEFVMDELKSLDDHLELKENMSTELRYADDTTLVTA
IFEKLEISTAELRPLVPNGE
Run BLAST on NCBI

transcript from alignment at sc0001658:14322..14909

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037581 ID=TCONS_00037581|Name=TCONS_00037581|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0001658:14322..14909 (Clytia hemisphaerica)
CCATCTGGCGGGAAGCATTATGGAAAATGATGCGTGCGATTGGTATTGAC
CCACGTATCGTTGATATCATTGAAAGCATCTACTCAAATGCTGAATGTGC
TGTAGTTGTTAACAAACAAATCACCAATTGGTTCAAGGTCAAGGTTGGTG
TACGACAAGGCTGTCTGCTATCTCCAGTCCTATTTAACATATTCCTGGAA
TTCGTTATGGATGAGCTGAAGAGTCTCGATGACCACCTTGAACTAAAAGA
AAATATGTCCACGGAGCTTAGGTATGCTGATGACACTACACTTGTGACcg
caatctttgaaaaattagaaatatcgACAGCTGAACTGAGACCGCTTGTT
CCAAATGGGGAATGAAGATCAACGCATCTAAATGCAAAACCATCAGTGAC
TCGCCAGTACCCATCCAAATCAACAATGAGAACGTTGAGAATGTCAGTGA
CTTTGTTTTCCTGGGAAGTAACGTTCCAGGCACTACAAACGACATCAAAC
GAAGACTGGGCTTAGCATCTTCCAGCTTTGGACGCTTAAGAGATCAAATA
TGGCGTAACAAAGACATAAGCCTGAAGCTGAAATTACN

Coding sequence (CDS) from alignment at sc0001658:14322..14909

>TCONS_00037581 ID=TCONS_00037581|Name=TCONS_00037581|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0001658:14322..14909 (Clytia hemisphaerica)
ATCTGGCGGGAAGCATTATGGAAAATGATGCGTGCGATTGGTATTGACCC
ACGTATCGTTGATATCATTGAAAGCATCTACTCAAATGCTGAATGTGCTG
TAGTTGTTAACAAACAAATCACCAATTGGTTCAAGGTCAAGGTTGGTGTA
CGACAAGGCTGTCTGCTATCTCCAGTCCTATTTAACATATTCCTGGAATT
CGTTATGGATGAGCTGAAGAGTCTCGATGACCACCTTGAACTAAAAGAAA
ATATGTCCACGGAGCTTAGGTATGCTGATGACACTACACTTGTGACcgca
atctttgaaaaattagaaatatcgACAGCTGAACTGAGACCGCTTGTTCC
AAATGGGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022337XLOC_022337Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037581-proteinTCONS_00037581-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037581-exon-sc0001658-1491911889:14322..14909TCONS_00037581-exon-sc0001658-1491911889:14322..14909Clytia hemisphaericaexon
TCONS_00037581-exon-sc0001658-1510915933:14322..14909TCONS_00037581-exon-sc0001658-1510915933:14322..14909Clytia hemisphaericaexon
TCONS_00037581-exon-sc0001658-1575043694:14322..14909TCONS_00037581-exon-sc0001658-1575043694:14322..14909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001658supercontigsc0001658:14322..14909 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.86031	5.66567	1.9126	2.25406	1.60065	2.19459	1.69565	0.976777	2.12882	2.79521	2.88549	2.17818	2.50421	1.26944	0.493449	0.687847	0.868877	1.8741	0.597049	0.624769	0.944952	1.07107	0.50941	0.759927	2.53419	1.89684	0.953133	1.32802	0.727289	0.651945
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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