TCONS_00037579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037579
Unique NameTCONS_00037579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037579 ID=TCONS_00037579|Name=TCONS_00037579|organism=Clytia hemisphaerica|type=transcript|length=1379bp
TCATCTAAATACAGGACCAAAAGATGAATGTTAGGTAAAAACTGAGAATA
TTTCCATCTTATCCTTGTAAAGCAATAATATCTGttcaaaaggagaaaaa
aaagaactatcaactttgaattttattttggcAATTTACATTATTTTGAA
TACAATACAAGCTAACAAGCCATAATAAATCATCTATTTTCTATCCTTAA
AAATTATTCATTAATCCATAGTGCTCCATAATACAGGACCATCAATTTAA
AAAACGGAGTGATGGACTAGAGAACTGCGAGGTGGGGCAGTTCCTCAAAC
TTGCCACATAACTAGGTTAGCATTTAACGCCGGAAAGTGAGTGCgagaat
ttttcgaaaattaccACGGCTCAAATTTTTAGACCATGGTATTAACATTG
ACTAATTAAATCATACCATCTTTATTTTCCagcttaaaaaataaaatgtc
aaaCCTAATCCCAGCCTATGGCTATGGTAGCATTCTGGATCAGCTACTTG
GGCTGAATCCACCACCACCGTCACCAGCTGACTCAGATGTTACTGTGGCA
TATGTGAGTATTTCTTAGGGAACTTGATTTGGCGAGTATAAAAAACGTAT
TTTTGAATTGAGGAGTAAGCAGAATATTTGATTACTATTTTTCCATCGTT
TTAATTTTGCAGCTCaaccaaattaaaagttttgtcACGTTATTATAGTT
GTGGGAATTTTTGTTCGATATGTCGGCTCAGTTAATTTTTCCTTTGATAG
TTTAACTCGCCGAAAGTAAGTTCCCTAAGATTTAATGAAAGATTGTAAAT
TGCCTGGTTTAGTTTAAATCAGACATCATAGTGCCAGTATGCGTTTTATT
TTGGGACATTTTGTATACAAGCTTATCAGATATTTTTATATTTGGTCTAC
AGATTATTTATTAGATCCTAAGAAAACTTTAATATTTTTCTCACAAAAGG
CTGTTGAGGATCAAGATCAGGTGACTGCAGAGATGGTCATCAAAGATGAA
CCAGGCGAGATTGAAGAACAGGACGAGAATGTAGAACCAGAACAGGACGA
GATTGTAGAACCAGAACAGGACGAGAATGAAGAACCAGAACAGGACGAGA
ATGTAGAACCAGAACAGGACGAGAATGTAGAACCAGAACAGGACGAGAAT
GAACAAGAACAGAATTTAGGAGGAGGTGGCAATTAGGTGGTAGGAAGAGG
AAATCAGGTGGTCGCAAGAGGAAGAGGAAGAGGTGGCAATCGATATGCCC
GAAGAGGTTGGGTCCATCGCCATTACGGAAGAAGGGGTCGTGGTAGAGGA
GGGAATGGTGGCGGGATGGTCGCAGAGCAGCTGCTTGAGCTCTTCCGCCT
CCAACTGGAGACATTTAAcaactttcaat
Run BLAST on NCBI

transcript from alignment at sc0001658:33261..34687-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037579 ID=TCONS_00037579|Name=TCONS_00037579|organism=Clytia hemisphaerica|type=transcript|length=1427bp|location=Sequence derived from alignment at sc0001658:33261..34687- (Clytia hemisphaerica)
TCATCTAAATACAGGACCAAAAGATGAATGTTAGGTAAAAACTGAGAATA
TTTCCATCTTATCCTTGTAAAGCAATAATATCTGTTCAAAAGGAGAAAAA
AAAGAACTATCAACTTTGAATTTTATTTTGGCAATTTACATTATTTTGAA
TACAATACAAGCTAACAAGCCATAATAAATCATCTATTTTCTATCCTTAA
AAATTATTCATTAATCCATAGTGCTCCATAATACAGGACCATCAATTTAA
AAAACGGAGTGATGGACTAGAGAACTGCGAGGTGGGGCAGTTCCTCAAAC
TTGCCACATAACTAGGTTAGCATTTAACGCCGGAAAGTGAGTGCGAGAAT
TTTTCGAAAATTACCACGGCTCAAATTTTTAGACCATGGTATTAACATTG
ACTAATTAAATCATACCATCTTTATTTTCCAGCTTAAAAAATAAAATGTC
AAACCTAATCCCAGCCTATGGCTATGGTAGCATTCTGGATCAGCTACTTG
GGCTGAATCCACCACCACCGTCACCAGCTGACTCAGATGTTACTGTGGCA
TATGTGAGTATTTCTTAGGGAACTTGATTTGGCGAGTATAAAAAACGTAT
TTTTGAATTGAGGAGTAAGCAGAATATTTGATTACTATTTTTCCATCGTT
TTAATTTTGCAGCTCAACCAAATTAAAAGTTTTGTCACGTTATTATAGTT
GTGGGAATTTTTGTTCGATATGTCGGCTCAGTTAATTTTTCCTTTGATAG
TTTAACTCGCCGAAAGTAAGTTCCCTAAGATTTAATGAAAGATTGTAAAT
TGCCTGGTTTAGTTTAAATCAGACATCATAGTGCCAGTATGCGTTTTATT
TTGGGACATTTTGTATACAAGCTTATCAGATATTTTTATATTTGGTCTAC
AGATTATTTATTAGATCCTAAGAAAACTTTAATATTTTTCTCACAAAAGG
CTGTTGAGGATCAAGATCAGGTGACTGCAGAGATGGTCATCAAAGATGAA
CCAGGCGAGATTGAAGAACATGACGAGAATGTAGAACCAGAACAGGACGA
GATTGTAGAACCAGAACAGGACGAGAATGTAGAACCAGAACAGGACGAGA
TTGTAGAACCAGAACAGGACGAGAATGAAGAACCAGAACAGGACGAGAAT
GTAGAACCAGAACAGGACGAGAATGTAGAACCAGAACAGGACGAGAATGA
ACAAGAACAGAATTTAGGAGGAGGTGGCAATTAGGTGGTAGGAAGAGGAA
ATCAGGTGGTCGCAAGAGGAAGAGGAAGAGGTGGCAATCGATATGCCCGA
AGAGGTTGGGTCCATCGCCATTACGGAAGAAGGGGTCGTGGTAGAGGAGG
GAATGGTGGCGGGATGGTCGCAGAGCAGCTGCTTGAGCTCTTCCGCCTCC
AACTGGAGACATTTAACAACTTTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022336XLOC_022336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037579-exon-sc0001658-1575043694:33669..34687TCONS_00037579-exon-sc0001658-1575043694:33669..34687Clytia hemisphaericaexon
TCONS_00037579-exon-sc0001658-1575043694:33261..33620TCONS_00037579-exon-sc0001658-1575043694:33261..33620Clytia hemisphaericaexon
TCONS_00037579-exon-sc0001658-1510915933:33669..34687TCONS_00037579-exon-sc0001658-1510915933:33669..34687Clytia hemisphaericaexon
TCONS_00037579-exon-sc0001658-1510915933:33261..33620TCONS_00037579-exon-sc0001658-1510915933:33261..33620Clytia hemisphaericaexon
TCONS_00037579-exon-sc0001658-1491911889:33669..34687TCONS_00037579-exon-sc0001658-1491911889:33669..34687Clytia hemisphaericaexon
TCONS_00037579-exon-sc0001658-1491911889:33261..33620TCONS_00037579-exon-sc0001658-1491911889:33261..33620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001658supercontigsc0001658:33261..34687 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.985271	0.731067	0.240332	0.167948	1.33074	1.1206	1.25994	2.05822	0.766575	0.847146	0	0.723138	0.32771	1.27192	1.16614	1.65772	1.85371	2.17145	0.805847	0.830039	1.49436	0.923918	1.57085	1.32249	0	0.116223	0.913097	0.57686	1.21366	1.08277
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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